Experiment: L-Rhamnose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01951 and ECD_01952 are separated by 161 nucleotides ECD_01952 and ECD_01953 are separated by 1 nucleotides
ECD_01951: ECD_01951 - colanic acid biosynthesis protein, at 2,016,156 to 2,017,436
_01951
ECD_01952: ECD_01952 - putative colanic acid exporter, at 2,017,598 to 2,019,076
_01952
ECD_01953: ECD_01953 - colanic biosynthesis UDP-glucose lipid carrier transferase, at 2,019,078 to 2,020,472
_01953
Position (kb)
2017
2018
2019
2020 Strain fitness (log2 ratio)
-1
0
1
2 at 2016.616 kb on + strand, within ECD_01951 at 2016.772 kb on + strand, within ECD_01951 at 2016.773 kb on - strand, within ECD_01951 at 2016.773 kb on - strand, within ECD_01951 at 2017.073 kb on + strand, within ECD_01951 at 2017.457 kb on + strand at 2017.458 kb on - strand at 2017.473 kb on + strand at 2017.592 kb on - strand at 2017.837 kb on - strand, within ECD_01952 at 2017.837 kb on - strand, within ECD_01952 at 2017.881 kb on + strand, within ECD_01952 at 2017.901 kb on - strand, within ECD_01952 at 2017.961 kb on - strand, within ECD_01952 at 2018.107 kb on + strand, within ECD_01952 at 2018.217 kb on + strand, within ECD_01952 at 2018.218 kb on - strand, within ECD_01952 at 2018.340 kb on + strand, within ECD_01952 at 2018.399 kb on - strand, within ECD_01952 at 2018.835 kb on + strand, within ECD_01952 at 2018.846 kb on - strand, within ECD_01952 at 2019.069 kb on - strand at 2019.230 kb on + strand, within ECD_01953 at 2019.281 kb on - strand, within ECD_01953 at 2019.914 kb on + strand, within ECD_01953
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose remove 2,016,616 + ECD_01951 0.36 +0.3 2,016,772 + ECD_01951 0.48 +0.5 2,016,773 - ECD_01951 0.48 +1.3 2,016,773 - ECD_01951 0.48 +1.3 2,017,073 + ECD_01951 0.72 -0.3 2,017,457 + +0.4 2,017,458 - +0.4 2,017,473 + +0.0 2,017,592 - -0.3 2,017,837 - ECD_01952 0.16 +2.4 2,017,837 - ECD_01952 0.16 -0.3 2,017,881 + ECD_01952 0.19 +0.5 2,017,901 - ECD_01952 0.20 -0.4 2,017,961 - ECD_01952 0.25 +1.0 2,018,107 + ECD_01952 0.34 +0.2 2,018,217 + ECD_01952 0.42 -0.2 2,018,218 - ECD_01952 0.42 +0.2 2,018,340 + ECD_01952 0.50 +0.9 2,018,399 - ECD_01952 0.54 +1.4 2,018,835 + ECD_01952 0.84 -0.3 2,018,846 - ECD_01952 0.84 -0.0 2,019,069 - +1.6 2,019,230 + ECD_01953 0.11 +0.2 2,019,281 - ECD_01953 0.15 +0.5 2,019,914 + ECD_01953 0.60 +0.2
Or see this region's nucleotide sequence