Strain Fitness in Escherichia coli BL21 around ECD_00949

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00947 and ECD_00948 overlap by 8 nucleotidesECD_00948 and ECD_00949 are separated by 110 nucleotidesECD_00949 and ECD_00950 are separated by 173 nucleotidesECD_00950 and ECD_00951 overlap by 4 nucleotides ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043 _00947 ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746 _00948 ECD_00949: ECD_00949 - dihydro-orotate oxidase, FMN-linked, at 1,009,857 to 1,010,867 _00949 ECD_00950: ECD_00950 - FtsZ stabilizer, at 1,011,041 to 1,011,583 _00950 ECD_00951: ECD_00951 - 6-N-hydroxylaminopurine detoxification oxidoreductase, at 1,011,580 to 1,012,689 _00951 Position (kb) 1009 1010 1011Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1008.932 kb on - strand, within ECD_00947at 1009.044 kb on + strandat 1009.209 kb on + strand, within ECD_00948at 1009.293 kb on + strand, within ECD_00948at 1009.505 kb on - strand, within ECD_00948at 1009.541 kb on + strand, within ECD_00948at 1009.592 kb on + strand, within ECD_00948at 1010.250 kb on + strand, within ECD_00949at 1010.487 kb on + strand, within ECD_00949at 1010.570 kb on + strand, within ECD_00949at 1011.126 kb on + strand, within ECD_00950at 1011.618 kb on + strandat 1011.619 kb on - strandat 1011.781 kb on - strand, within ECD_00951at 1011.781 kb on - strand, within ECD_00951

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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1,008,932 - ECD_00947 0.78 -1.0
1,009,044 + -1.1
1,009,209 + ECD_00948 0.24 -0.5
1,009,293 + ECD_00948 0.36 +0.6
1,009,505 - ECD_00948 0.66 -0.5
1,009,541 + ECD_00948 0.71 -0.6
1,009,592 + ECD_00948 0.78 +0.0
1,010,250 + ECD_00949 0.39 -3.1
1,010,487 + ECD_00949 0.62 -3.0
1,010,570 + ECD_00949 0.71 -4.3
1,011,126 + ECD_00950 0.16 +0.6
1,011,618 + +0.4
1,011,619 - +0.3
1,011,781 - ECD_00951 0.18 +1.2
1,011,781 - ECD_00951 0.18 -0.1

Or see this region's nucleotide sequence