Strain Fitness in Escherichia coli BL21 around ECD_00946

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00945 and ECD_00946 are separated by 11 nucleotidesECD_00946 and ECD_00947 are separated by 7 nucleotidesECD_00947 and ECD_00948 overlap by 8 nucleotides ECD_00945: ECD_00945 - putative fimbrial-like adhesin protein, at 1,006,896 to 1,007,966 _00945 ECD_00946: ECD_00946 - putative fimbriae protein, at 1,007,978 to 1,008,520 _00946 ECD_00947: ECD_00947 - putative fimbrial-like adhesin protein, at 1,008,528 to 1,009,043 _00947 ECD_00948: ECD_00948 - putative periplasmic pilin chaperone, at 1,009,036 to 1,009,746 _00948 Position (kb) 1007 1008 1009Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1007.006 kb on + strand, within ECD_00945at 1007.007 kb on - strand, within ECD_00945at 1007.022 kb on + strand, within ECD_00945at 1007.354 kb on - strand, within ECD_00945at 1007.401 kb on + strand, within ECD_00945at 1007.458 kb on - strand, within ECD_00945at 1007.467 kb on - strand, within ECD_00945at 1007.499 kb on - strand, within ECD_00945at 1007.505 kb on - strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.523 kb on + strand, within ECD_00945at 1007.626 kb on + strand, within ECD_00945at 1007.759 kb on + strand, within ECD_00945at 1007.814 kb on - strand, within ECD_00945at 1007.814 kb on - strand, within ECD_00945at 1007.909 kb on - strandat 1008.073 kb on + strand, within ECD_00946at 1008.297 kb on + strand, within ECD_00946at 1008.448 kb on + strand, within ECD_00946at 1008.448 kb on + strand, within ECD_00946at 1008.586 kb on + strand, within ECD_00947at 1008.635 kb on + strand, within ECD_00947at 1008.635 kb on + strand, within ECD_00947at 1008.932 kb on - strand, within ECD_00947at 1009.044 kb on + strandat 1009.209 kb on + strand, within ECD_00948at 1009.293 kb on + strand, within ECD_00948at 1009.505 kb on - strand, within ECD_00948

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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1,007,006 + ECD_00945 0.10 +0.5
1,007,007 - ECD_00945 0.10 +1.8
1,007,022 + ECD_00945 0.12 +0.2
1,007,354 - ECD_00945 0.43 -0.5
1,007,401 + ECD_00945 0.47 +0.6
1,007,458 - ECD_00945 0.52 -0.4
1,007,467 - ECD_00945 0.53 +1.2
1,007,499 - ECD_00945 0.56 +0.8
1,007,505 - ECD_00945 0.57 -0.4
1,007,523 + ECD_00945 0.59 -0.1
1,007,523 + ECD_00945 0.59 -3.4
1,007,523 + ECD_00945 0.59 +0.3
1,007,626 + ECD_00945 0.68 +0.8
1,007,759 + ECD_00945 0.81 +1.6
1,007,814 - ECD_00945 0.86 +0.1
1,007,814 - ECD_00945 0.86 -0.4
1,007,909 - -0.4
1,008,073 + ECD_00946 0.17 +0.4
1,008,297 + ECD_00946 0.59 +1.5
1,008,448 + ECD_00946 0.87 +0.2
1,008,448 + ECD_00946 0.87 +1.3
1,008,586 + ECD_00947 0.11 +0.2
1,008,635 + ECD_00947 0.21 -0.4
1,008,635 + ECD_00947 0.21 -0.0
1,008,932 - ECD_00947 0.78 -1.0
1,009,044 + -1.1
1,009,209 + ECD_00948 0.24 -0.5
1,009,293 + ECD_00948 0.36 +0.6
1,009,505 - ECD_00948 0.66 -0.5

Or see this region's nucleotide sequence