Strain Fitness in Escherichia coli BL21 around ECD_00550

Experiment: L-Rhamnose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00549 and ECD_00550 are separated by 165 nucleotidesECD_00550 and ECD_00551 are separated by 243 nucleotides ECD_00549: ECD_00549 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex, at 569,945 to 570,574 _00549 ECD_00550: ECD_00550 - ferrienterobactin outer membrane transporter, at 570,740 to 572,980 _00550 ECD_00551: ECD_00551 - enterobactin/ferrienterobactin esterase, at 573,224 to 574,426 _00551 Position (kb) 570 571 572 573Strain fitness (log2 ratio) -2 -1 0 1 2at 569.819 kb on + strandat 569.839 kb on + strandat 569.874 kb on + strandat 569.889 kb on - strandat 570.049 kb on + strand, within ECD_00549at 570.050 kb on - strand, within ECD_00549at 570.054 kb on - strand, within ECD_00549at 570.190 kb on + strand, within ECD_00549at 570.191 kb on - strand, within ECD_00549at 570.191 kb on - strand, within ECD_00549at 570.194 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.313 kb on - strand, within ECD_00549at 570.368 kb on - strand, within ECD_00549at 570.368 kb on - strand, within ECD_00549at 570.376 kb on - strand, within ECD_00549at 570.434 kb on - strand, within ECD_00549at 570.527 kb on - strandat 570.527 kb on - strandat 570.527 kb on - strandat 570.551 kb on - strandat 570.551 kb on - strandat 570.556 kb on + strandat 570.629 kb on + strandat 570.764 kb on - strandat 570.764 kb on - strandat 570.765 kb on + strandat 570.765 kb on + strandat 570.765 kb on + strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.766 kb on - strandat 570.772 kb on + strandat 570.773 kb on - strandat 570.789 kb on + strandat 570.789 kb on + strandat 570.789 kb on + strandat 570.790 kb on - strandat 570.790 kb on - strandat 570.796 kb on - strandat 570.816 kb on + strandat 570.817 kb on - strandat 570.817 kb on - strandat 571.000 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.002 kb on + strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.003 kb on - strand, within ECD_00550at 571.008 kb on + strand, within ECD_00550at 571.100 kb on - strand, within ECD_00550at 571.100 kb on - strand, within ECD_00550at 571.156 kb on + strand, within ECD_00550at 571.156 kb on + strand, within ECD_00550at 571.157 kb on - strand, within ECD_00550at 571.157 kb on - strand, within ECD_00550at 571.158 kb on + strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.159 kb on - strand, within ECD_00550at 571.169 kb on - strand, within ECD_00550at 571.421 kb on - strand, within ECD_00550at 571.431 kb on + strand, within ECD_00550at 571.432 kb on - strand, within ECD_00550at 571.432 kb on - strand, within ECD_00550at 571.452 kb on + strand, within ECD_00550at 571.453 kb on - strand, within ECD_00550at 571.474 kb on - strand, within ECD_00550at 571.483 kb on - strand, within ECD_00550at 571.483 kb on - strand, within ECD_00550at 571.516 kb on + strand, within ECD_00550at 571.517 kb on - strand, within ECD_00550at 571.560 kb on - strand, within ECD_00550at 571.607 kb on - strand, within ECD_00550at 571.638 kb on - strand, within ECD_00550at 571.784 kb on + strand, within ECD_00550at 571.785 kb on - strand, within ECD_00550at 571.785 kb on - strand, within ECD_00550at 571.785 kb on - strand, within ECD_00550at 571.785 kb on - strand, within ECD_00550at 572.086 kb on - strand, within ECD_00550at 572.116 kb on + strand, within ECD_00550at 572.218 kb on + strand, within ECD_00550at 572.417 kb on - strand, within ECD_00550at 572.417 kb on - strand, within ECD_00550at 572.585 kb on - strand, within ECD_00550at 572.696 kb on - strand, within ECD_00550at 572.847 kb on - strandat 572.875 kb on + strandat 572.876 kb on - strandat 572.876 kb on - strandat 572.876 kb on - strandat 572.876 kb on - strandat 572.876 kb on - strandat 572.879 kb on - strandat 572.900 kb on - strandat 572.931 kb on + strandat 572.932 kb on - strandat 573.100 kb on - strandat 573.100 kb on - strandat 573.503 kb on - strand, within ECD_00551at 573.503 kb on - strand, within ECD_00551at 573.580 kb on - strand, within ECD_00551at 573.613 kb on - strand, within ECD_00551at 573.909 kb on - strand, within ECD_00551at 573.962 kb on - strand, within ECD_00551

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
remove
569,819 + +0.2
569,839 + +0.0
569,874 + -0.8
569,889 - -0.2
570,049 + ECD_00549 0.17 +0.5
570,050 - ECD_00549 0.17 -1.8
570,054 - ECD_00549 0.17 -0.5
570,190 + ECD_00549 0.39 +0.2
570,191 - ECD_00549 0.39 -1.2
570,191 - ECD_00549 0.39 +0.1
570,194 - ECD_00549 0.40 +0.6
570,313 - ECD_00549 0.58 +0.2
570,313 - ECD_00549 0.58 +0.1
570,313 - ECD_00549 0.58 +0.4
570,368 - ECD_00549 0.67 -0.2
570,368 - ECD_00549 0.67 +0.6
570,376 - ECD_00549 0.68 -0.0
570,434 - ECD_00549 0.78 +0.3
570,527 - +0.8
570,527 - -0.8
570,527 - +0.7
570,551 - +0.7
570,551 - +0.9
570,556 + +0.9
570,629 + +0.5
570,764 - +0.6
570,764 - -1.8
570,765 + +1.1
570,765 + +0.7
570,765 + -0.0
570,766 - +1.2
570,766 - +0.7
570,766 - +0.3
570,766 - +0.9
570,766 - +0.3
570,766 - +0.3
570,766 - +0.2
570,766 - +0.4
570,766 - +0.1
570,772 + +0.7
570,773 - -1.5
570,789 + +0.3
570,789 + +0.5
570,789 + -0.1
570,790 - -1.6
570,790 - +0.5
570,796 - -1.6
570,816 + +0.2
570,817 - +0.4
570,817 - +0.1
571,000 + ECD_00550 0.12 +0.2
571,002 + ECD_00550 0.12 +0.1
571,002 + ECD_00550 0.12 +0.9
571,002 + ECD_00550 0.12 +0.8
571,002 + ECD_00550 0.12 +1.7
571,002 + ECD_00550 0.12 -0.2
571,003 - ECD_00550 0.12 -0.5
571,003 - ECD_00550 0.12 -0.4
571,003 - ECD_00550 0.12 -0.9
571,008 + ECD_00550 0.12 +0.5
571,100 - ECD_00550 0.16 +0.8
571,100 - ECD_00550 0.16 -0.1
571,156 + ECD_00550 0.19 -0.1
571,156 + ECD_00550 0.19 +0.2
571,157 - ECD_00550 0.19 -0.2
571,157 - ECD_00550 0.19 +0.2
571,158 + ECD_00550 0.19 -0.1
571,159 - ECD_00550 0.19 +1.0
571,159 - ECD_00550 0.19 +1.0
571,159 - ECD_00550 0.19 +0.4
571,159 - ECD_00550 0.19 +0.5
571,159 - ECD_00550 0.19 +0.2
571,159 - ECD_00550 0.19 +1.2
571,159 - ECD_00550 0.19 +0.5
571,169 - ECD_00550 0.19 -0.5
571,421 - ECD_00550 0.30 +0.2
571,431 + ECD_00550 0.31 +1.1
571,432 - ECD_00550 0.31 +0.7
571,432 - ECD_00550 0.31 +0.8
571,452 + ECD_00550 0.32 +0.6
571,453 - ECD_00550 0.32 +0.3
571,474 - ECD_00550 0.33 -0.3
571,483 - ECD_00550 0.33 +0.6
571,483 - ECD_00550 0.33 +0.1
571,516 + ECD_00550 0.35 +1.7
571,517 - ECD_00550 0.35 +0.3
571,560 - ECD_00550 0.37 +0.5
571,607 - ECD_00550 0.39 +0.1
571,638 - ECD_00550 0.40 +1.8
571,784 + ECD_00550 0.47 +0.1
571,785 - ECD_00550 0.47 +1.4
571,785 - ECD_00550 0.47 +0.9
571,785 - ECD_00550 0.47 +0.6
571,785 - ECD_00550 0.47 -0.2
572,086 - ECD_00550 0.60 -0.0
572,116 + ECD_00550 0.61 +1.7
572,218 + ECD_00550 0.66 +0.3
572,417 - ECD_00550 0.75 +0.4
572,417 - ECD_00550 0.75 +1.3
572,585 - ECD_00550 0.82 +0.5
572,696 - ECD_00550 0.87 +1.1
572,847 - -0.1
572,875 + -0.6
572,876 - -0.3
572,876 - -0.3
572,876 - +0.4
572,876 - +0.7
572,876 - +0.7
572,879 - +0.5
572,900 - -0.0
572,931 + +0.2
572,932 - +0.8
573,100 - +0.5
573,100 - +0.7
573,503 - ECD_00551 0.23 +2.0
573,503 - ECD_00551 0.23 +0.8
573,580 - ECD_00551 0.30 +0.5
573,613 - ECD_00551 0.32 +2.0
573,909 - ECD_00551 0.57 -0.4
573,962 - ECD_00551 0.61 -0.6

Or see this region's nucleotide sequence