Strain Fitness in Escherichia coli BL21 around ECD_00401

Experiment: L-Rhamnose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00400 and ECD_00401 overlap by 8 nucleotidesECD_00401 and ECD_00402 are separated by 180 nucleotidesECD_00402 and ECD_00403 are separated by 29 nucleotides ECD_00400: ECD_00400 - putative multidrug ABC transporter ATPase, at 437,917 to 439,689 _00400 ECD_00401: ECD_00401 - putative multidrug ABC transporter ATPase, at 439,682 to 441,463 _00401 ECD_00402: ECD_00402 - nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB, at 441,644 to 441,982 _00402 ECD_00403: ECD_00403 - ammonium transporter, at 442,012 to 443,298 _00403 Position (kb) 439 440 441 442Strain fitness (log2 ratio) -2 -1 0 1at 438.763 kb on + strand, within ECD_00400at 438.763 kb on + strand, within ECD_00400at 438.763 kb on + strand, within ECD_00400at 438.767 kb on + strand, within ECD_00400at 438.828 kb on + strand, within ECD_00400at 438.926 kb on + strand, within ECD_00400at 439.124 kb on + strand, within ECD_00400at 439.268 kb on + strand, within ECD_00400at 439.268 kb on + strand, within ECD_00400at 439.268 kb on + strand, within ECD_00400at 439.268 kb on + strand, within ECD_00400at 439.269 kb on - strand, within ECD_00400at 439.269 kb on - strand, within ECD_00400at 439.301 kb on - strand, within ECD_00400at 439.356 kb on + strand, within ECD_00400at 439.356 kb on + strand, within ECD_00400at 439.356 kb on + strand, within ECD_00400at 439.362 kb on + strand, within ECD_00400at 439.363 kb on - strand, within ECD_00400at 439.379 kb on + strand, within ECD_00400at 439.455 kb on + strand, within ECD_00400at 439.479 kb on + strand, within ECD_00400at 439.557 kb on + strandat 439.557 kb on + strandat 439.618 kb on + strandat 439.618 kb on + strandat 439.618 kb on + strandat 439.619 kb on - strandat 439.726 kb on - strandat 439.748 kb on - strandat 439.824 kb on - strandat 439.837 kb on + strandat 439.838 kb on - strandat 439.893 kb on - strand, within ECD_00401at 439.968 kb on + strand, within ECD_00401at 440.096 kb on + strand, within ECD_00401at 440.097 kb on - strand, within ECD_00401at 440.232 kb on + strand, within ECD_00401at 440.233 kb on - strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.234 kb on + strand, within ECD_00401at 440.235 kb on - strand, within ECD_00401at 440.235 kb on - strand, within ECD_00401at 440.281 kb on - strand, within ECD_00401at 440.369 kb on - strand, within ECD_00401at 440.393 kb on + strand, within ECD_00401at 440.394 kb on - strand, within ECD_00401at 440.394 kb on - strand, within ECD_00401at 440.394 kb on - strand, within ECD_00401at 440.394 kb on - strand, within ECD_00401at 440.395 kb on + strand, within ECD_00401at 440.534 kb on + strand, within ECD_00401at 440.534 kb on + strand, within ECD_00401at 440.535 kb on - strand, within ECD_00401at 440.666 kb on + strand, within ECD_00401at 440.762 kb on - strand, within ECD_00401at 440.838 kb on + strand, within ECD_00401at 440.895 kb on + strand, within ECD_00401at 440.904 kb on + strand, within ECD_00401at 440.904 kb on + strand, within ECD_00401at 441.001 kb on + strand, within ECD_00401at 441.001 kb on + strand, within ECD_00401at 441.076 kb on + strand, within ECD_00401at 441.080 kb on + strand, within ECD_00401at 441.080 kb on + strand, within ECD_00401at 441.256 kb on + strand, within ECD_00401at 441.257 kb on - strand, within ECD_00401at 441.395 kb on + strandat 441.395 kb on + strandat 441.395 kb on + strandat 441.396 kb on - strandat 441.396 kb on - strandat 441.396 kb on - strandat 441.517 kb on + strandat 441.518 kb on - strandat 441.594 kb on - strandat 441.643 kb on + strandat 441.644 kb on - strandat 441.644 kb on - strandat 441.644 kb on - strandat 441.715 kb on + strand, within ECD_00402at 441.794 kb on + strand, within ECD_00402at 442.113 kb on + strandat 442.262 kb on - strand, within ECD_00403at 442.363 kb on + strand, within ECD_00403at 442.369 kb on + strand, within ECD_00403at 442.369 kb on + strand, within ECD_00403

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Rhamnose
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438,763 + ECD_00400 0.48 -0.2
438,763 + ECD_00400 0.48 +0.8
438,763 + ECD_00400 0.48 -0.2
438,767 + ECD_00400 0.48 -0.3
438,828 + ECD_00400 0.51 +0.7
438,926 + ECD_00400 0.57 +0.6
439,124 + ECD_00400 0.68 +0.6
439,268 + ECD_00400 0.76 -0.2
439,268 + ECD_00400 0.76 -0.0
439,268 + ECD_00400 0.76 +0.7
439,268 + ECD_00400 0.76 +0.3
439,269 - ECD_00400 0.76 +0.0
439,269 - ECD_00400 0.76 -2.1
439,301 - ECD_00400 0.78 -0.7
439,356 + ECD_00400 0.81 +1.2
439,356 + ECD_00400 0.81 -0.7
439,356 + ECD_00400 0.81 +0.9
439,362 + ECD_00400 0.82 -0.2
439,363 - ECD_00400 0.82 -1.1
439,379 + ECD_00400 0.82 -0.0
439,455 + ECD_00400 0.87 -0.1
439,479 + ECD_00400 0.88 +1.5
439,557 + -0.0
439,557 + -0.8
439,618 + +0.3
439,618 + -0.1
439,618 + -0.3
439,619 - -0.7
439,726 - +1.5
439,748 - -0.2
439,824 - -0.2
439,837 + -0.7
439,838 - -0.2
439,893 - ECD_00401 0.12 -0.1
439,968 + ECD_00401 0.16 -0.3
440,096 + ECD_00401 0.23 -1.5
440,097 - ECD_00401 0.23 -0.2
440,232 + ECD_00401 0.31 -0.8
440,233 - ECD_00401 0.31 -0.3
440,234 + ECD_00401 0.31 +0.2
440,234 + ECD_00401 0.31 -0.1
440,234 + ECD_00401 0.31 +0.9
440,234 + ECD_00401 0.31 -1.5
440,234 + ECD_00401 0.31 -0.7
440,234 + ECD_00401 0.31 -0.1
440,234 + ECD_00401 0.31 +0.7
440,235 - ECD_00401 0.31 -0.8
440,235 - ECD_00401 0.31 -0.1
440,281 - ECD_00401 0.34 -0.1
440,369 - ECD_00401 0.39 -0.7
440,393 + ECD_00401 0.40 -0.3
440,394 - ECD_00401 0.40 -0.2
440,394 - ECD_00401 0.40 -0.3
440,394 - ECD_00401 0.40 -0.5
440,394 - ECD_00401 0.40 -0.4
440,395 + ECD_00401 0.40 -0.3
440,534 + ECD_00401 0.48 -0.1
440,534 + ECD_00401 0.48 +0.5
440,535 - ECD_00401 0.48 +0.3
440,666 + ECD_00401 0.55 +0.7
440,762 - ECD_00401 0.61 -0.0
440,838 + ECD_00401 0.65 -0.1
440,895 + ECD_00401 0.68 -0.5
440,904 + ECD_00401 0.69 -0.4
440,904 + ECD_00401 0.69 +0.1
441,001 + ECD_00401 0.74 -2.1
441,001 + ECD_00401 0.74 +0.1
441,076 + ECD_00401 0.78 +0.2
441,080 + ECD_00401 0.78 -0.2
441,080 + ECD_00401 0.78 +1.1
441,256 + ECD_00401 0.88 -1.5
441,257 - ECD_00401 0.88 +1.5
441,395 + -0.4
441,395 + -0.2
441,395 + +0.3
441,396 - -0.2
441,396 - -1.3
441,396 - +0.5
441,517 + -1.9
441,518 - +0.1
441,594 - +0.2
441,643 + -0.6
441,644 - -1.1
441,644 - +0.7
441,644 - +0.1
441,715 + ECD_00402 0.21 +0.1
441,794 + ECD_00402 0.44 +0.1
442,113 + +0.3
442,262 - ECD_00403 0.19 +0.4
442,363 + ECD_00403 0.27 -0.2
442,369 + ECD_00403 0.28 -0.2
442,369 + ECD_00403 0.28 +0.5

Or see this region's nucleotide sequence