Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_04183 and ECD_04184 are separated by 64 nucleotides ECD_04184 and ECD_04185 are separated by 36 nucleotides ECD_04185 and ECD_04186 are separated by 66 nucleotides
ECD_04183: ECD_04183 - major type 1 subunit fimbrin (pilin), at 4,452,394 to 4,452,942
_04183
ECD_04184: ECD_04184 - fimbrial protein involved in type 1 pilus biosynthesis, at 4,453,007 to 4,453,546
_04184
ECD_04185: ECD_04185 - periplasmic chaperone, at 4,453,583 to 4,454,308
_04185
ECD_04186: ECD_04186 - fimbrial usher outer membrane porin protein; FimCD chaperone-usher, at 4,454,375 to 4,457,011
_04186
Position (kb)
4453
4454
4455 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4452.624 kb on + strand, within ECD_04183 at 4452.664 kb on - strand, within ECD_04183 at 4452.664 kb on - strand, within ECD_04183 at 4452.708 kb on + strand, within ECD_04183 at 4452.816 kb on + strand, within ECD_04183 at 4452.817 kb on - strand, within ECD_04183 at 4452.850 kb on - strand, within ECD_04183 at 4452.850 kb on - strand, within ECD_04183 at 4452.934 kb on + strand at 4453.023 kb on + strand at 4453.023 kb on + strand at 4453.078 kb on + strand, within ECD_04184 at 4453.255 kb on + strand, within ECD_04184 at 4453.278 kb on + strand, within ECD_04184 at 4453.279 kb on - strand, within ECD_04184 at 4453.279 kb on - strand, within ECD_04184 at 4453.447 kb on + strand, within ECD_04184 at 4453.560 kb on - strand at 4453.606 kb on - strand at 4453.763 kb on - strand, within ECD_04185 at 4453.781 kb on + strand, within ECD_04185 at 4454.621 kb on + strand at 4454.638 kb on + strand at 4454.918 kb on - strand, within ECD_04186 at 4455.065 kb on - strand, within ECD_04186 at 4455.136 kb on - strand, within ECD_04186 at 4455.138 kb on + strand, within ECD_04186 at 4455.173 kb on + strand, within ECD_04186 at 4455.238 kb on + strand, within ECD_04186
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 4,452,624 + ECD_04183 0.42 +0.2 4,452,664 - ECD_04183 0.49 -2.8 4,452,664 - ECD_04183 0.49 +0.0 4,452,708 + ECD_04183 0.57 +0.6 4,452,816 + ECD_04183 0.77 +0.6 4,452,817 - ECD_04183 0.77 -1.1 4,452,850 - ECD_04183 0.83 -0.3 4,452,850 - ECD_04183 0.83 +0.6 4,452,934 + -0.2 4,453,023 + -0.1 4,453,023 + -0.1 4,453,078 + ECD_04184 0.13 +0.0 4,453,255 + ECD_04184 0.46 -0.6 4,453,278 + ECD_04184 0.50 -1.1 4,453,279 - ECD_04184 0.50 -0.3 4,453,279 - ECD_04184 0.50 -0.9 4,453,447 + ECD_04184 0.81 -0.1 4,453,560 - +1.2 4,453,606 - -1.4 4,453,763 - ECD_04185 0.25 -0.8 4,453,781 + ECD_04185 0.27 -0.9 4,454,621 + -0.2 4,454,638 + -0.1 4,454,918 - ECD_04186 0.21 +2.1 4,455,065 - ECD_04186 0.26 -0.3 4,455,136 - ECD_04186 0.29 +0.3 4,455,138 + ECD_04186 0.29 -0.3 4,455,173 + ECD_04186 0.30 +0.3 4,455,238 + ECD_04186 0.33 -0.4
Or see this region's nucleotide sequence