Strain Fitness in Escherichia coli BL21 around ECD_03822

Experiment: L-Arabinose

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_03820 and ECD_03821 are separated by 202 nucleotidesECD_03821 and ECD_03822 are separated by 54 nucleotidesECD_03822 and ECD_03823 are separated by 6 nucleotidesECD_03823 and ECD_03824 are separated by 183 nucleotides ECD_03820: ECD_03820 - Primosome factor n, at 4,032,535 to 4,034,733 _03820 ECD_03821: ECD_03821 - 50S ribosomal subunit protein L31, at 4,034,936 to 4,035,148 _03821 ECD_03822: ECD_03822 - putative outer membrane lipoprotein, at 4,035,203 to 4,035,826 _03822 ECD_03823: ECD_03823 - putative lipid binding hydrolase, DUF830 family protein, at 4,035,833 to 4,036,441 _03823 ECD_03824: ECD_03824 - transcriptional repressor, S-adenosylmethionine-binding, at 4,036,625 to 4,036,942 _03824 Position (kb) 4035 4036Strain fitness (log2 ratio) -2 -1 0 1 2at 4034.764 kb on + strandat 4034.765 kb on - strandat 4034.769 kb on + strandat 4034.769 kb on + strandat 4034.769 kb on + strandat 4034.769 kb on + strandat 4034.770 kb on - strandat 4035.218 kb on + strandat 4035.219 kb on - strandat 4035.276 kb on - strand, within ECD_03822at 4035.295 kb on + strand, within ECD_03822at 4035.296 kb on - strand, within ECD_03822at 4035.304 kb on + strand, within ECD_03822at 4035.308 kb on + strand, within ECD_03822at 4035.319 kb on - strand, within ECD_03822at 4035.337 kb on - strand, within ECD_03822at 4035.354 kb on + strand, within ECD_03822at 4035.355 kb on - strand, within ECD_03822at 4035.377 kb on - strand, within ECD_03822at 4035.416 kb on - strand, within ECD_03822at 4035.416 kb on - strand, within ECD_03822at 4035.425 kb on + strand, within ECD_03822at 4035.426 kb on - strand, within ECD_03822at 4035.426 kb on - strand, within ECD_03822at 4035.448 kb on + strand, within ECD_03822at 4035.448 kb on + strand, within ECD_03822at 4035.448 kb on + strand, within ECD_03822at 4035.448 kb on + strand, within ECD_03822at 4035.448 kb on + strand, within ECD_03822at 4035.449 kb on - strand, within ECD_03822at 4035.449 kb on - strand, within ECD_03822at 4035.463 kb on + strand, within ECD_03822at 4035.532 kb on + strand, within ECD_03822at 4035.533 kb on - strand, within ECD_03822at 4035.586 kb on - strand, within ECD_03822at 4035.715 kb on + strand, within ECD_03822at 4035.717 kb on + strand, within ECD_03822at 4035.718 kb on - strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.721 kb on + strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.722 kb on - strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.724 kb on + strand, within ECD_03822at 4035.835 kb on - strandat 4035.908 kb on + strand, within ECD_03823at 4035.955 kb on + strand, within ECD_03823at 4035.956 kb on - strand, within ECD_03823at 4036.063 kb on - strand, within ECD_03823at 4036.098 kb on + strand, within ECD_03823at 4036.099 kb on - strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.185 kb on + strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.186 kb on - strand, within ECD_03823at 4036.231 kb on - strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.277 kb on + strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.301 kb on - strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.333 kb on + strand, within ECD_03823at 4036.400 kb on + strandat 4036.441 kb on + strandat 4036.441 kb on + strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.442 kb on - strandat 4036.445 kb on + strandat 4036.445 kb on + strandat 4036.446 kb on - strandat 4036.457 kb on + strandat 4036.457 kb on + strandat 4036.458 kb on - strandat 4036.458 kb on - strandat 4036.459 kb on + strandat 4036.460 kb on - strandat 4036.569 kb on - strandat 4036.627 kb on - strandat 4036.629 kb on + strandat 4036.629 kb on + strandat 4036.630 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
remove
4,034,764 + +1.1
4,034,765 - +0.2
4,034,769 + +0.1
4,034,769 + -2.4
4,034,769 + +0.6
4,034,769 + -0.1
4,034,770 - -0.6
4,035,218 + -0.5
4,035,219 - +0.2
4,035,276 - ECD_03822 0.12 -1.0
4,035,295 + ECD_03822 0.15 -0.2
4,035,296 - ECD_03822 0.15 +0.2
4,035,304 + ECD_03822 0.16 +0.3
4,035,308 + ECD_03822 0.17 +0.1
4,035,319 - ECD_03822 0.19 -0.3
4,035,337 - ECD_03822 0.21 -0.4
4,035,354 + ECD_03822 0.24 +0.9
4,035,355 - ECD_03822 0.24 -0.2
4,035,377 - ECD_03822 0.28 -0.5
4,035,416 - ECD_03822 0.34 -0.3
4,035,416 - ECD_03822 0.34 +0.0
4,035,425 + ECD_03822 0.36 +1.2
4,035,426 - ECD_03822 0.36 +0.6
4,035,426 - ECD_03822 0.36 +0.9
4,035,448 + ECD_03822 0.39 +0.5
4,035,448 + ECD_03822 0.39 +0.3
4,035,448 + ECD_03822 0.39 +0.8
4,035,448 + ECD_03822 0.39 -0.1
4,035,448 + ECD_03822 0.39 +0.4
4,035,449 - ECD_03822 0.39 +0.4
4,035,449 - ECD_03822 0.39 +0.8
4,035,463 + ECD_03822 0.42 -0.1
4,035,532 + ECD_03822 0.53 +0.6
4,035,533 - ECD_03822 0.53 +0.4
4,035,586 - ECD_03822 0.61 -1.0
4,035,715 + ECD_03822 0.82 -0.6
4,035,717 + ECD_03822 0.82 -0.3
4,035,718 - ECD_03822 0.83 -0.6
4,035,721 + ECD_03822 0.83 +0.5
4,035,721 + ECD_03822 0.83 +1.0
4,035,721 + ECD_03822 0.83 +0.5
4,035,722 - ECD_03822 0.83 +0.8
4,035,722 - ECD_03822 0.83 -0.5
4,035,722 - ECD_03822 0.83 +0.3
4,035,724 + ECD_03822 0.83 +0.5
4,035,724 + ECD_03822 0.83 +2.5
4,035,724 + ECD_03822 0.83 +0.2
4,035,835 - +1.1
4,035,908 + ECD_03823 0.12 +0.6
4,035,955 + ECD_03823 0.20 +0.3
4,035,956 - ECD_03823 0.20 +0.1
4,036,063 - ECD_03823 0.38 +0.4
4,036,098 + ECD_03823 0.44 -0.3
4,036,099 - ECD_03823 0.44 +0.3
4,036,185 + ECD_03823 0.58 -0.2
4,036,185 + ECD_03823 0.58 -0.3
4,036,185 + ECD_03823 0.58 +2.6
4,036,185 + ECD_03823 0.58 +0.2
4,036,185 + ECD_03823 0.58 -0.1
4,036,185 + ECD_03823 0.58 +0.1
4,036,186 - ECD_03823 0.58 +0.4
4,036,186 - ECD_03823 0.58 -0.0
4,036,186 - ECD_03823 0.58 -0.6
4,036,186 - ECD_03823 0.58 +1.2
4,036,186 - ECD_03823 0.58 +1.9
4,036,186 - ECD_03823 0.58 +0.1
4,036,186 - ECD_03823 0.58 -0.6
4,036,231 - ECD_03823 0.65 +0.0
4,036,277 + ECD_03823 0.73 -0.0
4,036,277 + ECD_03823 0.73 -0.9
4,036,277 + ECD_03823 0.73 -0.1
4,036,301 - ECD_03823 0.77 -0.1
4,036,301 - ECD_03823 0.77 -0.1
4,036,333 + ECD_03823 0.82 +0.7
4,036,333 + ECD_03823 0.82 -0.4
4,036,400 + +0.3
4,036,441 + +0.2
4,036,441 + -0.4
4,036,442 - -0.1
4,036,442 - +0.2
4,036,442 - +0.3
4,036,445 + +0.1
4,036,445 + +0.3
4,036,446 - -0.3
4,036,457 + -0.0
4,036,457 + +0.4
4,036,458 - -2.5
4,036,458 - +0.3
4,036,459 + +0.5
4,036,460 - -0.7
4,036,569 - -1.0
4,036,627 - +0.3
4,036,629 + +0.0
4,036,629 + +0.1
4,036,630 - -0.1

Or see this region's nucleotide sequence