Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03455 and ECD_03456 overlap by 1 nucleotides ECD_03456 and ECD_03457 are separated by 11 nucleotides ECD_03457 and ECD_03458 are separated by 284 nucleotides
ECD_03455: ECD_03455 - mannitol-1-phosphate dehydrogenase, NAD-dependent, at 3,637,552 to 3,638,700
_03455
ECD_03456: ECD_03456 - mannitol operon repressor, at 3,638,700 to 3,639,287
_03456
ECD_03457: ECD_03457 - uncharacterized protein, at 3,639,299 to 3,639,508
_03457
ECD_03458: ECD_03458 - ribosome-associated DUF2810 family protein, at 3,639,793 to 3,640,155
_03458
Position (kb)
3638
3639
3640 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3637.721 kb on + strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.722 kb on - strand, within ECD_03455 at 3637.726 kb on - strand, within ECD_03455 at 3637.796 kb on + strand, within ECD_03455 at 3637.796 kb on + strand, within ECD_03455 at 3637.796 kb on + strand, within ECD_03455 at 3637.796 kb on + strand, within ECD_03455 at 3637.833 kb on + strand, within ECD_03455 at 3637.833 kb on + strand, within ECD_03455 at 3637.833 kb on + strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.834 kb on - strand, within ECD_03455 at 3637.870 kb on - strand, within ECD_03455 at 3637.881 kb on + strand, within ECD_03455 at 3637.922 kb on + strand, within ECD_03455 at 3637.923 kb on - strand, within ECD_03455 at 3637.923 kb on - strand, within ECD_03455 at 3638.056 kb on - strand, within ECD_03455 at 3638.079 kb on - strand, within ECD_03455 at 3638.184 kb on + strand, within ECD_03455 at 3638.184 kb on + strand, within ECD_03455 at 3638.214 kb on + strand, within ECD_03455 at 3638.214 kb on + strand, within ECD_03455 at 3638.214 kb on + strand, within ECD_03455 at 3638.214 kb on + strand, within ECD_03455 at 3638.215 kb on - strand, within ECD_03455 at 3638.215 kb on - strand, within ECD_03455 at 3638.225 kb on - strand, within ECD_03455 at 3638.324 kb on + strand, within ECD_03455 at 3638.368 kb on + strand, within ECD_03455 at 3638.404 kb on + strand, within ECD_03455 at 3638.420 kb on + strand, within ECD_03455 at 3638.420 kb on + strand, within ECD_03455 at 3638.500 kb on + strand, within ECD_03455 at 3638.514 kb on + strand, within ECD_03455 at 3638.514 kb on + strand, within ECD_03455 at 3638.685 kb on + strand at 3638.750 kb on + strand at 3638.919 kb on + strand, within ECD_03456 at 3638.919 kb on + strand, within ECD_03456 at 3638.919 kb on + strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.920 kb on - strand, within ECD_03456 at 3638.977 kb on + strand, within ECD_03456 at 3639.018 kb on + strand, within ECD_03456 at 3639.286 kb on - strand at 3639.300 kb on + strand at 3639.300 kb on + strand at 3639.339 kb on + strand, within ECD_03457 at 3639.340 kb on - strand, within ECD_03457 at 3639.342 kb on + strand, within ECD_03457 at 3639.356 kb on + strand, within ECD_03457 at 3639.356 kb on + strand, within ECD_03457 at 3639.357 kb on - strand, within ECD_03457 at 3639.357 kb on - strand, within ECD_03457 at 3639.360 kb on + strand, within ECD_03457 at 3639.360 kb on + strand, within ECD_03457 at 3639.361 kb on - strand, within ECD_03457 at 3639.361 kb on - strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.362 kb on + strand, within ECD_03457 at 3639.363 kb on - strand, within ECD_03457 at 3639.426 kb on + strand, within ECD_03457 at 3639.515 kb on - strand at 3639.515 kb on - strand at 3639.559 kb on - strand at 3639.633 kb on - strand at 3639.697 kb on + strand at 3639.697 kb on + strand at 3639.713 kb on + strand at 3639.713 kb on + strand at 3639.754 kb on - strand at 3639.764 kb on - strand at 3639.771 kb on + strand at 3639.772 kb on - strand at 3639.777 kb on + strand at 3639.895 kb on + strand, within ECD_03458 at 3639.896 kb on - strand, within ECD_03458 at 3640.020 kb on + strand, within ECD_03458 at 3640.021 kb on - strand, within ECD_03458 at 3640.154 kb on - strand at 3640.173 kb on + strand at 3640.174 kb on - strand at 3640.174 kb on - strand at 3640.182 kb on - strand at 3640.268 kb on - strand at 3640.268 kb on - strand at 3640.278 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,637,721 + ECD_03455 0.15 +0.1 3,637,722 - ECD_03455 0.15 -1.2 3,637,722 - ECD_03455 0.15 -0.2 3,637,722 - ECD_03455 0.15 -0.4 3,637,722 - ECD_03455 0.15 +0.3 3,637,722 - ECD_03455 0.15 -2.3 3,637,722 - ECD_03455 0.15 +0.7 3,637,726 - ECD_03455 0.15 -1.7 3,637,796 + ECD_03455 0.21 +0.9 3,637,796 + ECD_03455 0.21 -0.1 3,637,796 + ECD_03455 0.21 +0.2 3,637,796 + ECD_03455 0.21 -0.7 3,637,833 + ECD_03455 0.24 +3.4 3,637,833 + ECD_03455 0.24 -0.9 3,637,833 + ECD_03455 0.24 +0.9 3,637,834 - ECD_03455 0.25 -0.4 3,637,834 - ECD_03455 0.25 +1.3 3,637,834 - ECD_03455 0.25 -1.7 3,637,834 - ECD_03455 0.25 +0.9 3,637,834 - ECD_03455 0.25 +0.2 3,637,834 - ECD_03455 0.25 -1.4 3,637,870 - ECD_03455 0.28 +3.0 3,637,881 + ECD_03455 0.29 -0.1 3,637,922 + ECD_03455 0.32 +0.5 3,637,923 - ECD_03455 0.32 -1.0 3,637,923 - ECD_03455 0.32 -0.8 3,638,056 - ECD_03455 0.44 -0.5 3,638,079 - ECD_03455 0.46 +0.9 3,638,184 + ECD_03455 0.55 +0.5 3,638,184 + ECD_03455 0.55 +0.2 3,638,214 + ECD_03455 0.58 +0.7 3,638,214 + ECD_03455 0.58 +1.3 3,638,214 + ECD_03455 0.58 -0.6 3,638,214 + ECD_03455 0.58 -0.8 3,638,215 - ECD_03455 0.58 -1.6 3,638,215 - ECD_03455 0.58 +0.4 3,638,225 - ECD_03455 0.59 +2.0 3,638,324 + ECD_03455 0.67 -0.0 3,638,368 + ECD_03455 0.71 +0.1 3,638,404 + ECD_03455 0.74 -0.3 3,638,420 + ECD_03455 0.76 -0.1 3,638,420 + ECD_03455 0.76 +0.8 3,638,500 + ECD_03455 0.83 +1.4 3,638,514 + ECD_03455 0.84 -0.2 3,638,514 + ECD_03455 0.84 +1.4 3,638,685 + -0.9 3,638,750 + -0.1 3,638,919 + ECD_03456 0.37 -0.3 3,638,919 + ECD_03456 0.37 -1.5 3,638,919 + ECD_03456 0.37 -0.3 3,638,920 - ECD_03456 0.37 -2.1 3,638,920 - ECD_03456 0.37 +0.6 3,638,920 - ECD_03456 0.37 +0.1 3,638,977 + ECD_03456 0.47 -1.9 3,639,018 + ECD_03456 0.54 -2.6 3,639,286 - -1.1 3,639,300 + +0.1 3,639,300 + -1.0 3,639,339 + ECD_03457 0.19 +0.1 3,639,340 - ECD_03457 0.20 -1.6 3,639,342 + ECD_03457 0.20 -0.2 3,639,356 + ECD_03457 0.27 -0.5 3,639,356 + ECD_03457 0.27 -0.0 3,639,357 - ECD_03457 0.28 +0.1 3,639,357 - ECD_03457 0.28 +1.0 3,639,360 + ECD_03457 0.29 -0.5 3,639,360 + ECD_03457 0.29 +0.5 3,639,361 - ECD_03457 0.30 +0.2 3,639,361 - ECD_03457 0.30 -0.5 3,639,362 + ECD_03457 0.30 +0.5 3,639,362 + ECD_03457 0.30 +0.1 3,639,362 + ECD_03457 0.30 +2.1 3,639,363 - ECD_03457 0.30 +0.5 3,639,426 + ECD_03457 0.60 +0.0 3,639,515 - -0.7 3,639,515 - -0.1 3,639,559 - +0.5 3,639,633 - +0.2 3,639,697 + +0.2 3,639,697 + -0.0 3,639,713 + +0.7 3,639,713 + +0.3 3,639,754 - -0.0 3,639,764 - -0.1 3,639,771 + -1.0 3,639,772 - -0.7 3,639,777 + +0.1 3,639,895 + ECD_03458 0.28 +0.4 3,639,896 - ECD_03458 0.28 -0.7 3,640,020 + ECD_03458 0.63 -0.3 3,640,021 - ECD_03458 0.63 -0.9 3,640,154 - +0.6 3,640,173 + -0.4 3,640,174 - +1.0 3,640,174 - +1.3 3,640,182 - -0.1 3,640,268 - +1.2 3,640,268 - +0.1 3,640,278 - +0.0
Or see this region's nucleotide sequence