Strain Fitness in Escherichia coli BL21 around ECD_03456

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03455 and ECD_03456 overlap by 1 nucleotidesECD_03456 and ECD_03457 are separated by 11 nucleotidesECD_03457 and ECD_03458 are separated by 284 nucleotides ECD_03455: ECD_03455 - mannitol-1-phosphate dehydrogenase, NAD-dependent, at 3,637,552 to 3,638,700 _03455 ECD_03456: ECD_03456 - mannitol operon repressor, at 3,638,700 to 3,639,287 _03456 ECD_03457: ECD_03457 - uncharacterized protein, at 3,639,299 to 3,639,508 _03457 ECD_03458: ECD_03458 - ribosome-associated DUF2810 family protein, at 3,639,793 to 3,640,155 _03458 Position (kb) 3638 3639 3640Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3637.721 kb on + strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.722 kb on - strand, within ECD_03455at 3637.726 kb on - strand, within ECD_03455at 3637.796 kb on + strand, within ECD_03455at 3637.796 kb on + strand, within ECD_03455at 3637.796 kb on + strand, within ECD_03455at 3637.796 kb on + strand, within ECD_03455at 3637.833 kb on + strand, within ECD_03455at 3637.833 kb on + strand, within ECD_03455at 3637.833 kb on + strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.834 kb on - strand, within ECD_03455at 3637.870 kb on - strand, within ECD_03455at 3637.881 kb on + strand, within ECD_03455at 3637.922 kb on + strand, within ECD_03455at 3637.923 kb on - strand, within ECD_03455at 3637.923 kb on - strand, within ECD_03455at 3638.056 kb on - strand, within ECD_03455at 3638.079 kb on - strand, within ECD_03455at 3638.184 kb on + strand, within ECD_03455at 3638.184 kb on + strand, within ECD_03455at 3638.214 kb on + strand, within ECD_03455at 3638.214 kb on + strand, within ECD_03455at 3638.214 kb on + strand, within ECD_03455at 3638.214 kb on + strand, within ECD_03455at 3638.215 kb on - strand, within ECD_03455at 3638.215 kb on - strand, within ECD_03455at 3638.225 kb on - strand, within ECD_03455at 3638.324 kb on + strand, within ECD_03455at 3638.368 kb on + strand, within ECD_03455at 3638.404 kb on + strand, within ECD_03455at 3638.420 kb on + strand, within ECD_03455at 3638.420 kb on + strand, within ECD_03455at 3638.500 kb on + strand, within ECD_03455at 3638.514 kb on + strand, within ECD_03455at 3638.514 kb on + strand, within ECD_03455at 3638.685 kb on + strandat 3638.750 kb on + strandat 3638.919 kb on + strand, within ECD_03456at 3638.919 kb on + strand, within ECD_03456at 3638.919 kb on + strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.920 kb on - strand, within ECD_03456at 3638.977 kb on + strand, within ECD_03456at 3639.018 kb on + strand, within ECD_03456at 3639.286 kb on - strandat 3639.300 kb on + strandat 3639.300 kb on + strandat 3639.339 kb on + strand, within ECD_03457at 3639.340 kb on - strand, within ECD_03457at 3639.342 kb on + strand, within ECD_03457at 3639.356 kb on + strand, within ECD_03457at 3639.356 kb on + strand, within ECD_03457at 3639.357 kb on - strand, within ECD_03457at 3639.357 kb on - strand, within ECD_03457at 3639.360 kb on + strand, within ECD_03457at 3639.360 kb on + strand, within ECD_03457at 3639.361 kb on - strand, within ECD_03457at 3639.361 kb on - strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.362 kb on + strand, within ECD_03457at 3639.363 kb on - strand, within ECD_03457at 3639.426 kb on + strand, within ECD_03457at 3639.515 kb on - strandat 3639.515 kb on - strandat 3639.559 kb on - strandat 3639.633 kb on - strandat 3639.697 kb on + strandat 3639.697 kb on + strandat 3639.713 kb on + strandat 3639.713 kb on + strandat 3639.754 kb on - strandat 3639.764 kb on - strandat 3639.771 kb on + strandat 3639.772 kb on - strandat 3639.777 kb on + strandat 3639.895 kb on + strand, within ECD_03458at 3639.896 kb on - strand, within ECD_03458at 3640.020 kb on + strand, within ECD_03458at 3640.021 kb on - strand, within ECD_03458at 3640.154 kb on - strandat 3640.173 kb on + strandat 3640.174 kb on - strandat 3640.174 kb on - strandat 3640.182 kb on - strandat 3640.268 kb on - strandat 3640.268 kb on - strandat 3640.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,637,721 + ECD_03455 0.15 +0.1
3,637,722 - ECD_03455 0.15 -1.2
3,637,722 - ECD_03455 0.15 -0.2
3,637,722 - ECD_03455 0.15 -0.4
3,637,722 - ECD_03455 0.15 +0.3
3,637,722 - ECD_03455 0.15 -2.3
3,637,722 - ECD_03455 0.15 +0.7
3,637,726 - ECD_03455 0.15 -1.7
3,637,796 + ECD_03455 0.21 +0.9
3,637,796 + ECD_03455 0.21 -0.1
3,637,796 + ECD_03455 0.21 +0.2
3,637,796 + ECD_03455 0.21 -0.7
3,637,833 + ECD_03455 0.24 +3.4
3,637,833 + ECD_03455 0.24 -0.9
3,637,833 + ECD_03455 0.24 +0.9
3,637,834 - ECD_03455 0.25 -0.4
3,637,834 - ECD_03455 0.25 +1.3
3,637,834 - ECD_03455 0.25 -1.7
3,637,834 - ECD_03455 0.25 +0.9
3,637,834 - ECD_03455 0.25 +0.2
3,637,834 - ECD_03455 0.25 -1.4
3,637,870 - ECD_03455 0.28 +3.0
3,637,881 + ECD_03455 0.29 -0.1
3,637,922 + ECD_03455 0.32 +0.5
3,637,923 - ECD_03455 0.32 -1.0
3,637,923 - ECD_03455 0.32 -0.8
3,638,056 - ECD_03455 0.44 -0.5
3,638,079 - ECD_03455 0.46 +0.9
3,638,184 + ECD_03455 0.55 +0.5
3,638,184 + ECD_03455 0.55 +0.2
3,638,214 + ECD_03455 0.58 +0.7
3,638,214 + ECD_03455 0.58 +1.3
3,638,214 + ECD_03455 0.58 -0.6
3,638,214 + ECD_03455 0.58 -0.8
3,638,215 - ECD_03455 0.58 -1.6
3,638,215 - ECD_03455 0.58 +0.4
3,638,225 - ECD_03455 0.59 +2.0
3,638,324 + ECD_03455 0.67 -0.0
3,638,368 + ECD_03455 0.71 +0.1
3,638,404 + ECD_03455 0.74 -0.3
3,638,420 + ECD_03455 0.76 -0.1
3,638,420 + ECD_03455 0.76 +0.8
3,638,500 + ECD_03455 0.83 +1.4
3,638,514 + ECD_03455 0.84 -0.2
3,638,514 + ECD_03455 0.84 +1.4
3,638,685 + -0.9
3,638,750 + -0.1
3,638,919 + ECD_03456 0.37 -0.3
3,638,919 + ECD_03456 0.37 -1.5
3,638,919 + ECD_03456 0.37 -0.3
3,638,920 - ECD_03456 0.37 -2.1
3,638,920 - ECD_03456 0.37 +0.6
3,638,920 - ECD_03456 0.37 +0.1
3,638,977 + ECD_03456 0.47 -1.9
3,639,018 + ECD_03456 0.54 -2.6
3,639,286 - -1.1
3,639,300 + +0.1
3,639,300 + -1.0
3,639,339 + ECD_03457 0.19 +0.1
3,639,340 - ECD_03457 0.20 -1.6
3,639,342 + ECD_03457 0.20 -0.2
3,639,356 + ECD_03457 0.27 -0.5
3,639,356 + ECD_03457 0.27 -0.0
3,639,357 - ECD_03457 0.28 +0.1
3,639,357 - ECD_03457 0.28 +1.0
3,639,360 + ECD_03457 0.29 -0.5
3,639,360 + ECD_03457 0.29 +0.5
3,639,361 - ECD_03457 0.30 +0.2
3,639,361 - ECD_03457 0.30 -0.5
3,639,362 + ECD_03457 0.30 +0.5
3,639,362 + ECD_03457 0.30 +0.1
3,639,362 + ECD_03457 0.30 +2.1
3,639,363 - ECD_03457 0.30 +0.5
3,639,426 + ECD_03457 0.60 +0.0
3,639,515 - -0.7
3,639,515 - -0.1
3,639,559 - +0.5
3,639,633 - +0.2
3,639,697 + +0.2
3,639,697 + -0.0
3,639,713 + +0.7
3,639,713 + +0.3
3,639,754 - -0.0
3,639,764 - -0.1
3,639,771 + -1.0
3,639,772 - -0.7
3,639,777 + +0.1
3,639,895 + ECD_03458 0.28 +0.4
3,639,896 - ECD_03458 0.28 -0.7
3,640,020 + ECD_03458 0.63 -0.3
3,640,021 - ECD_03458 0.63 -0.9
3,640,154 - +0.6
3,640,173 + -0.4
3,640,174 - +1.0
3,640,174 - +1.3
3,640,182 - -0.1
3,640,268 - +1.2
3,640,268 - +0.1
3,640,278 - +0.0

Or see this region's nucleotide sequence