Strain Fitness in Escherichia coli BL21 around ECD_03447

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03446 and ECD_03447 are separated by 97 nucleotidesECD_03447 and ECD_03448 are separated by 228 nucleotides ECD_03446: ECD_03446 - selenocysteine synthase, at 3,626,247 to 3,627,638 _03446 ECD_03447: ECD_03447 - glutathione S-transferase-like protein, at 3,627,736 to 3,628,344 _03447 ECD_03448: ECD_03448 - Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor, at 3,628,573 to 3,629,445 _03448 Position (kb) 3627 3628 3629Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3626.863 kb on - strand, within ECD_03446at 3626.875 kb on - strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.950 kb on + strand, within ECD_03446at 3626.954 kb on + strand, within ECD_03446at 3626.955 kb on - strand, within ECD_03446at 3626.961 kb on - strand, within ECD_03446at 3626.964 kb on + strand, within ECD_03446at 3626.964 kb on + strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3626.965 kb on - strand, within ECD_03446at 3627.007 kb on + strand, within ECD_03446at 3627.039 kb on + strand, within ECD_03446at 3627.049 kb on - strand, within ECD_03446at 3627.185 kb on + strand, within ECD_03446at 3627.186 kb on - strand, within ECD_03446at 3627.194 kb on + strand, within ECD_03446at 3627.215 kb on + strand, within ECD_03446at 3627.280 kb on + strand, within ECD_03446at 3627.280 kb on + strand, within ECD_03446at 3627.281 kb on - strand, within ECD_03446at 3627.281 kb on - strand, within ECD_03446at 3627.342 kb on + strand, within ECD_03446at 3627.362 kb on + strand, within ECD_03446at 3627.547 kb on + strandat 3627.548 kb on - strandat 3627.548 kb on - strandat 3627.548 kb on - strandat 3627.548 kb on - strandat 3627.548 kb on - strandat 3627.552 kb on - strandat 3627.552 kb on - strandat 3627.552 kb on - strandat 3627.586 kb on - strandat 3627.613 kb on + strandat 3627.613 kb on + strandat 3627.613 kb on + strandat 3627.613 kb on + strandat 3627.613 kb on + strandat 3627.613 kb on + strandat 3627.614 kb on - strandat 3627.614 kb on - strandat 3627.614 kb on - strandat 3627.639 kb on - strandat 3627.685 kb on - strandat 3627.702 kb on + strandat 3627.702 kb on + strandat 3627.727 kb on + strandat 3627.927 kb on - strand, within ECD_03447at 3628.045 kb on - strand, within ECD_03447at 3628.045 kb on - strand, within ECD_03447at 3628.137 kb on + strand, within ECD_03447at 3628.137 kb on + strand, within ECD_03447at 3628.138 kb on - strand, within ECD_03447at 3628.139 kb on + strand, within ECD_03447at 3628.140 kb on - strand, within ECD_03447at 3628.140 kb on - strand, within ECD_03447at 3628.244 kb on + strand, within ECD_03447at 3628.261 kb on - strand, within ECD_03447at 3628.285 kb on + strandat 3628.297 kb on - strandat 3628.310 kb on - strandat 3628.325 kb on + strandat 3628.326 kb on - strandat 3628.376 kb on + strandat 3628.377 kb on - strandat 3628.513 kb on + strandat 3628.898 kb on - strand, within ECD_03448at 3628.898 kb on - strand, within ECD_03448at 3628.898 kb on - strand, within ECD_03448at 3629.035 kb on - strand, within ECD_03448at 3629.051 kb on + strand, within ECD_03448at 3629.124 kb on + strand, within ECD_03448at 3629.190 kb on - strand, within ECD_03448at 3629.216 kb on + strand, within ECD_03448at 3629.217 kb on - strand, within ECD_03448at 3629.220 kb on + strand, within ECD_03448at 3629.220 kb on + strand, within ECD_03448at 3629.220 kb on + strand, within ECD_03448at 3629.221 kb on - strand, within ECD_03448at 3629.222 kb on + strand, within ECD_03448at 3629.222 kb on + strand, within ECD_03448at 3629.222 kb on + strand, within ECD_03448at 3629.222 kb on + strand, within ECD_03448at 3629.222 kb on + strand, within ECD_03448at 3629.264 kb on + strand, within ECD_03448at 3629.285 kb on + strand, within ECD_03448at 3629.286 kb on - strand, within ECD_03448

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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3,626,863 - ECD_03446 0.44 +2.3
3,626,875 - ECD_03446 0.45 -0.6
3,626,950 + ECD_03446 0.51 -0.7
3,626,950 + ECD_03446 0.51 -0.2
3,626,950 + ECD_03446 0.51 -0.0
3,626,954 + ECD_03446 0.51 -0.2
3,626,955 - ECD_03446 0.51 -0.5
3,626,961 - ECD_03446 0.51 +0.3
3,626,964 + ECD_03446 0.52 +0.6
3,626,964 + ECD_03446 0.52 -0.5
3,626,965 - ECD_03446 0.52 -0.7
3,626,965 - ECD_03446 0.52 +0.8
3,626,965 - ECD_03446 0.52 -0.7
3,626,965 - ECD_03446 0.52 -0.3
3,627,007 + ECD_03446 0.55 +0.1
3,627,039 + ECD_03446 0.57 +0.4
3,627,049 - ECD_03446 0.58 -0.0
3,627,185 + ECD_03446 0.67 -0.3
3,627,186 - ECD_03446 0.67 +0.0
3,627,194 + ECD_03446 0.68 +0.2
3,627,215 + ECD_03446 0.70 -0.4
3,627,280 + ECD_03446 0.74 +0.4
3,627,280 + ECD_03446 0.74 -1.3
3,627,281 - ECD_03446 0.74 +0.2
3,627,281 - ECD_03446 0.74 -0.7
3,627,342 + ECD_03446 0.79 +0.5
3,627,362 + ECD_03446 0.80 +0.1
3,627,547 + -0.0
3,627,548 - -0.2
3,627,548 - +0.3
3,627,548 - +1.1
3,627,548 - +0.5
3,627,548 - +0.1
3,627,552 - -0.1
3,627,552 - +0.2
3,627,552 - +1.5
3,627,586 - -0.4
3,627,613 + -0.1
3,627,613 + -0.1
3,627,613 + +0.3
3,627,613 + -1.2
3,627,613 + +1.3
3,627,613 + -3.6
3,627,614 - -0.6
3,627,614 - +0.2
3,627,614 - -0.7
3,627,639 - +0.0
3,627,685 - -0.6
3,627,702 + +0.8
3,627,702 + +0.6
3,627,727 + +0.3
3,627,927 - ECD_03447 0.31 +0.0
3,628,045 - ECD_03447 0.51 -0.0
3,628,045 - ECD_03447 0.51 -2.5
3,628,137 + ECD_03447 0.66 -0.5
3,628,137 + ECD_03447 0.66 -1.3
3,628,138 - ECD_03447 0.66 +0.4
3,628,139 + ECD_03447 0.66 +1.2
3,628,140 - ECD_03447 0.66 -0.6
3,628,140 - ECD_03447 0.66 +0.1
3,628,244 + ECD_03447 0.83 -0.3
3,628,261 - ECD_03447 0.86 -0.4
3,628,285 + +0.0
3,628,297 - -1.8
3,628,310 - +0.3
3,628,325 + +0.2
3,628,326 - +0.2
3,628,376 + -0.3
3,628,377 - +0.6
3,628,513 + +0.9
3,628,898 - ECD_03448 0.37 -0.0
3,628,898 - ECD_03448 0.37 -0.1
3,628,898 - ECD_03448 0.37 -1.8
3,629,035 - ECD_03448 0.53 -0.5
3,629,051 + ECD_03448 0.55 -0.4
3,629,124 + ECD_03448 0.63 -0.2
3,629,190 - ECD_03448 0.71 -0.4
3,629,216 + ECD_03448 0.74 -0.2
3,629,217 - ECD_03448 0.74 +0.1
3,629,220 + ECD_03448 0.74 +0.2
3,629,220 + ECD_03448 0.74 +0.5
3,629,220 + ECD_03448 0.74 +0.1
3,629,221 - ECD_03448 0.74 +0.8
3,629,222 + ECD_03448 0.74 +0.6
3,629,222 + ECD_03448 0.74 -1.3
3,629,222 + ECD_03448 0.74 +0.0
3,629,222 + ECD_03448 0.74 -1.3
3,629,222 + ECD_03448 0.74 +0.5
3,629,264 + ECD_03448 0.79 +1.3
3,629,285 + ECD_03448 0.82 -0.2
3,629,286 - ECD_03448 0.82 +0.4

Or see this region's nucleotide sequence