Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03446 and ECD_03447 are separated by 97 nucleotides ECD_03447 and ECD_03448 are separated by 228 nucleotides
ECD_03446: ECD_03446 - selenocysteine synthase, at 3,626,247 to 3,627,638
_03446
ECD_03447: ECD_03447 - glutathione S-transferase-like protein, at 3,627,736 to 3,628,344
_03447
ECD_03448: ECD_03448 - Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor, at 3,628,573 to 3,629,445
_03448
Position (kb)
3627
3628
3629 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3626.863 kb on - strand, within ECD_03446 at 3626.875 kb on - strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.950 kb on + strand, within ECD_03446 at 3626.954 kb on + strand, within ECD_03446 at 3626.955 kb on - strand, within ECD_03446 at 3626.961 kb on - strand, within ECD_03446 at 3626.964 kb on + strand, within ECD_03446 at 3626.964 kb on + strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3626.965 kb on - strand, within ECD_03446 at 3627.007 kb on + strand, within ECD_03446 at 3627.039 kb on + strand, within ECD_03446 at 3627.049 kb on - strand, within ECD_03446 at 3627.185 kb on + strand, within ECD_03446 at 3627.186 kb on - strand, within ECD_03446 at 3627.194 kb on + strand, within ECD_03446 at 3627.215 kb on + strand, within ECD_03446 at 3627.280 kb on + strand, within ECD_03446 at 3627.280 kb on + strand, within ECD_03446 at 3627.281 kb on - strand, within ECD_03446 at 3627.281 kb on - strand, within ECD_03446 at 3627.342 kb on + strand, within ECD_03446 at 3627.362 kb on + strand, within ECD_03446 at 3627.547 kb on + strand at 3627.548 kb on - strand at 3627.548 kb on - strand at 3627.548 kb on - strand at 3627.548 kb on - strand at 3627.548 kb on - strand at 3627.552 kb on - strand at 3627.552 kb on - strand at 3627.552 kb on - strand at 3627.586 kb on - strand at 3627.613 kb on + strand at 3627.613 kb on + strand at 3627.613 kb on + strand at 3627.613 kb on + strand at 3627.613 kb on + strand at 3627.613 kb on + strand at 3627.614 kb on - strand at 3627.614 kb on - strand at 3627.614 kb on - strand at 3627.639 kb on - strand at 3627.685 kb on - strand at 3627.702 kb on + strand at 3627.702 kb on + strand at 3627.727 kb on + strand at 3627.927 kb on - strand, within ECD_03447 at 3628.045 kb on - strand, within ECD_03447 at 3628.045 kb on - strand, within ECD_03447 at 3628.137 kb on + strand, within ECD_03447 at 3628.137 kb on + strand, within ECD_03447 at 3628.138 kb on - strand, within ECD_03447 at 3628.139 kb on + strand, within ECD_03447 at 3628.140 kb on - strand, within ECD_03447 at 3628.140 kb on - strand, within ECD_03447 at 3628.244 kb on + strand, within ECD_03447 at 3628.261 kb on - strand, within ECD_03447 at 3628.285 kb on + strand at 3628.297 kb on - strand at 3628.310 kb on - strand at 3628.325 kb on + strand at 3628.326 kb on - strand at 3628.376 kb on + strand at 3628.377 kb on - strand at 3628.513 kb on + strand at 3628.898 kb on - strand, within ECD_03448 at 3628.898 kb on - strand, within ECD_03448 at 3628.898 kb on - strand, within ECD_03448 at 3629.035 kb on - strand, within ECD_03448 at 3629.051 kb on + strand, within ECD_03448 at 3629.124 kb on + strand, within ECD_03448 at 3629.190 kb on - strand, within ECD_03448 at 3629.216 kb on + strand, within ECD_03448 at 3629.217 kb on - strand, within ECD_03448 at 3629.220 kb on + strand, within ECD_03448 at 3629.220 kb on + strand, within ECD_03448 at 3629.220 kb on + strand, within ECD_03448 at 3629.221 kb on - strand, within ECD_03448 at 3629.222 kb on + strand, within ECD_03448 at 3629.222 kb on + strand, within ECD_03448 at 3629.222 kb on + strand, within ECD_03448 at 3629.222 kb on + strand, within ECD_03448 at 3629.222 kb on + strand, within ECD_03448 at 3629.264 kb on + strand, within ECD_03448 at 3629.285 kb on + strand, within ECD_03448 at 3629.286 kb on - strand, within ECD_03448
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 3,626,863 - ECD_03446 0.44 +2.3 3,626,875 - ECD_03446 0.45 -0.6 3,626,950 + ECD_03446 0.51 -0.7 3,626,950 + ECD_03446 0.51 -0.2 3,626,950 + ECD_03446 0.51 -0.0 3,626,954 + ECD_03446 0.51 -0.2 3,626,955 - ECD_03446 0.51 -0.5 3,626,961 - ECD_03446 0.51 +0.3 3,626,964 + ECD_03446 0.52 +0.6 3,626,964 + ECD_03446 0.52 -0.5 3,626,965 - ECD_03446 0.52 -0.7 3,626,965 - ECD_03446 0.52 +0.8 3,626,965 - ECD_03446 0.52 -0.7 3,626,965 - ECD_03446 0.52 -0.3 3,627,007 + ECD_03446 0.55 +0.1 3,627,039 + ECD_03446 0.57 +0.4 3,627,049 - ECD_03446 0.58 -0.0 3,627,185 + ECD_03446 0.67 -0.3 3,627,186 - ECD_03446 0.67 +0.0 3,627,194 + ECD_03446 0.68 +0.2 3,627,215 + ECD_03446 0.70 -0.4 3,627,280 + ECD_03446 0.74 +0.4 3,627,280 + ECD_03446 0.74 -1.3 3,627,281 - ECD_03446 0.74 +0.2 3,627,281 - ECD_03446 0.74 -0.7 3,627,342 + ECD_03446 0.79 +0.5 3,627,362 + ECD_03446 0.80 +0.1 3,627,547 + -0.0 3,627,548 - -0.2 3,627,548 - +0.3 3,627,548 - +1.1 3,627,548 - +0.5 3,627,548 - +0.1 3,627,552 - -0.1 3,627,552 - +0.2 3,627,552 - +1.5 3,627,586 - -0.4 3,627,613 + -0.1 3,627,613 + -0.1 3,627,613 + +0.3 3,627,613 + -1.2 3,627,613 + +1.3 3,627,613 + -3.6 3,627,614 - -0.6 3,627,614 - +0.2 3,627,614 - -0.7 3,627,639 - +0.0 3,627,685 - -0.6 3,627,702 + +0.8 3,627,702 + +0.6 3,627,727 + +0.3 3,627,927 - ECD_03447 0.31 +0.0 3,628,045 - ECD_03447 0.51 -0.0 3,628,045 - ECD_03447 0.51 -2.5 3,628,137 + ECD_03447 0.66 -0.5 3,628,137 + ECD_03447 0.66 -1.3 3,628,138 - ECD_03447 0.66 +0.4 3,628,139 + ECD_03447 0.66 +1.2 3,628,140 - ECD_03447 0.66 -0.6 3,628,140 - ECD_03447 0.66 +0.1 3,628,244 + ECD_03447 0.83 -0.3 3,628,261 - ECD_03447 0.86 -0.4 3,628,285 + +0.0 3,628,297 - -1.8 3,628,310 - +0.3 3,628,325 + +0.2 3,628,326 - +0.2 3,628,376 + -0.3 3,628,377 - +0.6 3,628,513 + +0.9 3,628,898 - ECD_03448 0.37 -0.0 3,628,898 - ECD_03448 0.37 -0.1 3,628,898 - ECD_03448 0.37 -1.8 3,629,035 - ECD_03448 0.53 -0.5 3,629,051 + ECD_03448 0.55 -0.4 3,629,124 + ECD_03448 0.63 -0.2 3,629,190 - ECD_03448 0.71 -0.4 3,629,216 + ECD_03448 0.74 -0.2 3,629,217 - ECD_03448 0.74 +0.1 3,629,220 + ECD_03448 0.74 +0.2 3,629,220 + ECD_03448 0.74 +0.5 3,629,220 + ECD_03448 0.74 +0.1 3,629,221 - ECD_03448 0.74 +0.8 3,629,222 + ECD_03448 0.74 +0.6 3,629,222 + ECD_03448 0.74 -1.3 3,629,222 + ECD_03448 0.74 +0.0 3,629,222 + ECD_03448 0.74 -1.3 3,629,222 + ECD_03448 0.74 +0.5 3,629,264 + ECD_03448 0.79 +1.3 3,629,285 + ECD_03448 0.82 -0.2 3,629,286 - ECD_03448 0.82 +0.4
Or see this region's nucleotide sequence