Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02252 and ECD_02253 overlap by 1 nucleotides ECD_02253 and ECD_02254 are separated by 3 nucleotides ECD_02254 and ECD_02255 are separated by 34 nucleotides
ECD_02252: ECD_02252 - TauE/TSUP family inner membrane protein, at 2,332,004 to 2,332,813
_02252
ECD_02253: ECD_02253 - murein DD-endopeptidase, at 2,332,813 to 2,333,637
_02253
ECD_02254: ECD_02254 - chorismate synthase, at 2,333,641 to 2,334,726
_02254
ECD_02255: ECD_02255 - N5-glutamine methyltransferase, at 2,334,761 to 2,335,693
_02255
Position (kb)
2333
2334
2335 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2332.789 kb on + strand at 2332.801 kb on + strand at 2332.814 kb on + strand at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2332.997 kb on - strand, within ECD_02253 at 2333.002 kb on + strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.003 kb on - strand, within ECD_02253 at 2333.435 kb on + strand, within ECD_02253 at 2333.466 kb on - strand, within ECD_02253 at 2333.506 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.515 kb on - strand, within ECD_02253 at 2333.818 kb on - strand, within ECD_02254 at 2334.401 kb on + strand, within ECD_02254 at 2334.402 kb on - strand, within ECD_02254 at 2334.433 kb on - strand, within ECD_02254 at 2334.821 kb on - strand at 2334.887 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2334.894 kb on - strand, within ECD_02255 at 2335.027 kb on - strand, within ECD_02255 at 2335.049 kb on - strand, within ECD_02255 at 2335.279 kb on + strand, within ECD_02255 at 2335.419 kb on + strand, within ECD_02255 at 2335.420 kb on - strand, within ECD_02255 at 2335.557 kb on - strand, within ECD_02255 at 2335.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 2,332,789 + -2.3 2,332,801 + +0.4 2,332,814 + -1.5 2,332,997 - ECD_02253 0.22 +0.3 2,332,997 - ECD_02253 0.22 -0.6 2,332,997 - ECD_02253 0.22 -0.4 2,333,002 + ECD_02253 0.23 -0.4 2,333,003 - ECD_02253 0.23 -1.3 2,333,003 - ECD_02253 0.23 +0.3 2,333,435 + ECD_02253 0.75 +0.6 2,333,466 - ECD_02253 0.79 +0.6 2,333,506 - ECD_02253 0.84 -0.1 2,333,515 - ECD_02253 0.85 -0.2 2,333,515 - ECD_02253 0.85 -0.3 2,333,818 - ECD_02254 0.16 -3.4 2,334,401 + ECD_02254 0.70 -2.2 2,334,402 - ECD_02254 0.70 -1.4 2,334,433 - ECD_02254 0.73 -1.6 2,334,821 - -0.7 2,334,887 - ECD_02255 0.14 -1.1 2,334,894 - ECD_02255 0.14 +0.2 2,334,894 - ECD_02255 0.14 +0.4 2,335,027 - ECD_02255 0.29 -0.5 2,335,049 - ECD_02255 0.31 +2.1 2,335,279 + ECD_02255 0.56 -0.8 2,335,419 + ECD_02255 0.71 -1.5 2,335,420 - ECD_02255 0.71 +1.3 2,335,557 - ECD_02255 0.85 +0.7 2,335,665 - -0.8
Or see this region's nucleotide sequence