Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01867 and ECD_01868 are separated by 14 nucleotides ECD_01868 and ECD_01869 are separated by 69 nucleotides
ECD_01867: ECD_01867 - L-arabinose ABC transporter permease, at 1,927,696 to 1,928,682
_01867
ECD_01868: ECD_01868 - L-arabinose ABC transporter ATPase, at 1,928,697 to 1,930,211
_01868
ECD_01869: ECD_01869 - L-arabinose ABC transporter periplasmic binding protein, at 1,930,281 to 1,931,270
_01869
Position (kb)
1928
1929
1930
1931 Strain fitness (log2 ratio)
-2
-1
0
1 at 1927.773 kb on - strand at 1927.773 kb on - strand at 1928.088 kb on + strand, within ECD_01867 at 1928.296 kb on + strand, within ECD_01867 at 1928.646 kb on + strand at 1928.647 kb on - strand at 1928.895 kb on - strand, within ECD_01868 at 1928.895 kb on - strand, within ECD_01868 at 1929.106 kb on - strand, within ECD_01868 at 1929.128 kb on + strand, within ECD_01868 at 1929.243 kb on - strand, within ECD_01868 at 1929.387 kb on + strand, within ECD_01868 at 1929.550 kb on + strand, within ECD_01868 at 1929.619 kb on + strand, within ECD_01868 at 1929.622 kb on - strand, within ECD_01868 at 1930.133 kb on + strand at 1930.341 kb on + strand at 1930.418 kb on + strand, within ECD_01869 at 1930.429 kb on - strand, within ECD_01869 at 1930.479 kb on - strand, within ECD_01869 at 1930.836 kb on - strand, within ECD_01869 at 1930.836 kb on - strand, within ECD_01869 at 1930.837 kb on + strand, within ECD_01869 at 1931.010 kb on - strand, within ECD_01869
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,927,773 - +1.0 1,927,773 - +1.0 1,928,088 + ECD_01867 0.40 +1.6 1,928,296 + ECD_01867 0.61 -0.2 1,928,646 + +1.2 1,928,647 - -1.1 1,928,895 - ECD_01868 0.13 -1.0 1,928,895 - ECD_01868 0.13 +0.6 1,929,106 - ECD_01868 0.27 -0.6 1,929,128 + ECD_01868 0.28 +0.2 1,929,243 - ECD_01868 0.36 +0.8 1,929,387 + ECD_01868 0.46 -0.9 1,929,550 + ECD_01868 0.56 -0.3 1,929,619 + ECD_01868 0.61 +1.1 1,929,622 - ECD_01868 0.61 +0.3 1,930,133 + +0.2 1,930,341 + +0.9 1,930,418 + ECD_01869 0.14 +0.4 1,930,429 - ECD_01869 0.15 +1.3 1,930,479 - ECD_01869 0.20 +0.9 1,930,836 - ECD_01869 0.56 -0.8 1,930,836 - ECD_01869 0.56 -2.6 1,930,837 + ECD_01869 0.56 +1.6 1,931,010 - ECD_01869 0.74 +0.3
Or see this region's nucleotide sequence