Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01804 and ECD_01805 overlap by 32 nucleotides ECD_01805 and ECD_01806 are separated by 79 nucleotides
ECD_01804: ECD_01804 - inner membrane PqiA domain protein, at 1,861,983 to 1,863,266
_01804
ECD_01805: ECD_01805 - MCE domain protein, at 1,863,235 to 1,865,868
_01805
ECD_01806: ECD_01806 - 16S rRNA m(5)C1407 methyltransferase, SAM-dependent, at 1,865,948 to 1,867,387
_01806
Position (kb)
1863
1864
1865
1866 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1862.263 kb on + strand, within ECD_01804 at 1862.394 kb on + strand, within ECD_01804 at 1862.815 kb on + strand, within ECD_01804 at 1862.834 kb on + strand, within ECD_01804 at 1862.835 kb on - strand, within ECD_01804 at 1862.963 kb on + strand, within ECD_01804 at 1863.094 kb on + strand, within ECD_01804 at 1863.393 kb on + strand at 1863.493 kb on - strand at 1863.625 kb on + strand, within ECD_01805 at 1863.625 kb on + strand, within ECD_01805 at 1863.645 kb on + strand, within ECD_01805 at 1863.802 kb on + strand, within ECD_01805 at 1864.163 kb on + strand, within ECD_01805 at 1864.487 kb on + strand, within ECD_01805 at 1864.911 kb on + strand, within ECD_01805 at 1865.030 kb on + strand, within ECD_01805 at 1865.366 kb on + strand, within ECD_01805 at 1865.367 kb on - strand, within ECD_01805 at 1865.389 kb on - strand, within ECD_01805 at 1865.484 kb on + strand, within ECD_01805 at 1865.626 kb on + strand at 1865.643 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 1,862,263 + ECD_01804 0.22 -2.4 1,862,394 + ECD_01804 0.32 -0.9 1,862,815 + ECD_01804 0.65 -1.4 1,862,834 + ECD_01804 0.66 -0.9 1,862,835 - ECD_01804 0.66 +0.4 1,862,963 + ECD_01804 0.76 +0.3 1,863,094 + ECD_01804 0.87 -1.2 1,863,393 + +0.1 1,863,493 - +0.6 1,863,625 + ECD_01805 0.15 -0.2 1,863,625 + ECD_01805 0.15 -0.8 1,863,645 + ECD_01805 0.16 +0.1 1,863,802 + ECD_01805 0.22 -1.9 1,864,163 + ECD_01805 0.35 -0.2 1,864,487 + ECD_01805 0.48 -1.1 1,864,911 + ECD_01805 0.64 -0.7 1,865,030 + ECD_01805 0.68 -0.4 1,865,366 + ECD_01805 0.81 -0.6 1,865,367 - ECD_01805 0.81 -1.3 1,865,389 - ECD_01805 0.82 -0.6 1,865,484 + ECD_01805 0.85 -1.8 1,865,626 + -3.0 1,865,643 + +0.5
Or see this region's nucleotide sequence