Strain Fitness in Escherichia coli BL21 around ECD_01226

Experiment: L-Arabinose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01224 and ECD_01225 are separated by 299 nucleotidesECD_01225 and ECD_01226 are separated by 223 nucleotidesECD_01226 and ECD_01227 are separated by 39 nucleotidesECD_01227 and ECD_01228 are separated by 104 nucleotides ECD_01224: ECD_01224 - voltage-gated potassium channel, at 1,294,608 to 1,295,861 _01224 ECD_01225: ECD_01225 - putative DGPF domain-containing enzyme, at 1,296,161 to 1,296,457 _01225 ECD_01226: ECD_01226 - membrane spanning protein in TonB-ExbB-ExbD transport complex, at 1,296,681 to 1,297,400 _01226 ECD_01227: ECD_01227 - acyl-CoA esterase, at 1,297,440 to 1,297,838 _01227 ECD_01228: ECD_01228 - IspA family inner membrane protein, at 1,297,943 to 1,298,482 _01228 Position (kb) 1296 1297 1298Strain fitness (log2 ratio) -3 -2 -1 0 1at 1296.039 kb on + strandat 1296.220 kb on - strand, within ECD_01225at 1296.369 kb on - strand, within ECD_01225at 1296.422 kb on - strand, within ECD_01225at 1296.492 kb on - strandat 1296.765 kb on + strand, within ECD_01226at 1296.767 kb on + strand, within ECD_01226at 1296.886 kb on + strand, within ECD_01226at 1297.214 kb on + strand, within ECD_01226at 1297.490 kb on - strand, within ECD_01227at 1297.494 kb on - strand, within ECD_01227at 1297.494 kb on - strand, within ECD_01227at 1297.516 kb on + strand, within ECD_01227at 1297.823 kb on + strandat 1297.824 kb on - strandat 1297.824 kb on - strandat 1297.842 kb on - strandat 1297.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arabinose
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1,296,039 + +1.4
1,296,220 - ECD_01225 0.20 +0.3
1,296,369 - ECD_01225 0.70 +1.0
1,296,422 - ECD_01225 0.88 +1.0
1,296,492 - -0.1
1,296,765 + ECD_01226 0.12 -1.8
1,296,767 + ECD_01226 0.12 -1.8
1,296,886 + ECD_01226 0.28 -0.1
1,297,214 + ECD_01226 0.74 -2.8
1,297,490 - ECD_01227 0.13 -0.1
1,297,494 - ECD_01227 0.14 -0.4
1,297,494 - ECD_01227 0.14 +0.4
1,297,516 + ECD_01227 0.19 -1.2
1,297,823 + -0.0
1,297,824 - -0.8
1,297,824 - -0.8
1,297,842 - +0.2
1,297,878 + +0.9

Or see this region's nucleotide sequence