Experiment: L-Arabinose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00910 and ECD_00911 are separated by 198 nucleotides ECD_00911 and ECD_00912 are separated by 70 nucleotides
ECD_00910: ECD_00910 - UPF0702 family putative inner membrane protein, at 961,852 to 962,544
_00910
ECD_00911: ECD_00911 - 3-phosphoserine/phosphohydroxythreonine aminotransferase, at 962,743 to 963,831
_00911
ECD_00912: ECD_00912 - 5-enolpyruvylshikimate-3-phosphate synthetase, at 963,902 to 965,185
_00912
Position (kb) 962
963
964 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 961.759 kb on + strand at 961.768 kb on + strand at 961.783 kb on - strand at 961.922 kb on + strand, within ECD_00910 at 961.926 kb on + strand, within ECD_00910 at 961.943 kb on + strand, within ECD_00910 at 962.056 kb on + strand, within ECD_00910 at 962.082 kb on - strand, within ECD_00910 at 962.086 kb on - strand, within ECD_00910 at 962.097 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.261 kb on + strand, within ECD_00910 at 962.262 kb on - strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.294 kb on + strand, within ECD_00910 at 962.369 kb on + strand, within ECD_00910 at 962.391 kb on + strand, within ECD_00910 at 962.429 kb on - strand, within ECD_00910 at 962.437 kb on - strand, within ECD_00910 at 962.571 kb on + strand at 962.681 kb on + strand at 962.682 kb on - strand at 962.684 kb on + strand at 962.715 kb on + strand at 962.715 kb on + strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.719 kb on - strand at 962.783 kb on + strand at 962.841 kb on + strand at 962.842 kb on - strand at 962.941 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 962.948 kb on + strand, within ECD_00911 at 963.028 kb on + strand, within ECD_00911 at 963.175 kb on + strand, within ECD_00911 at 963.177 kb on + strand, within ECD_00911 at 963.178 kb on - strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.314 kb on + strand, within ECD_00911 at 963.315 kb on - strand, within ECD_00911 at 963.481 kb on + strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.482 kb on - strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.569 kb on + strand, within ECD_00911 at 963.571 kb on + strand, within ECD_00911 at 963.759 kb on + strand at 963.919 kb on - strand at 963.950 kb on - strand at 964.071 kb on + strand, within ECD_00912 at 964.091 kb on + strand, within ECD_00912 at 964.093 kb on + strand, within ECD_00912 at 964.261 kb on + strand, within ECD_00912 at 964.459 kb on + strand, within ECD_00912 at 964.460 kb on - strand, within ECD_00912 at 964.471 kb on + strand, within ECD_00912 at 964.610 kb on + strand, within ECD_00912 at 964.611 kb on - strand, within ECD_00912 at 964.781 kb on - strand, within ECD_00912
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arabinose remove 961,759 + -1.3 961,768 + -1.0 961,783 - +0.7 961,922 + ECD_00910 0.10 +0.0 961,926 + ECD_00910 0.11 +1.5 961,943 + ECD_00910 0.13 +0.0 962,056 + ECD_00910 0.29 +0.1 962,082 - ECD_00910 0.33 +0.2 962,086 - ECD_00910 0.34 +0.6 962,097 + ECD_00910 0.35 -0.3 962,261 + ECD_00910 0.59 -0.0 962,261 + ECD_00910 0.59 -0.8 962,262 - ECD_00910 0.59 +0.4 962,294 + ECD_00910 0.64 +0.4 962,294 + ECD_00910 0.64 +0.7 962,369 + ECD_00910 0.75 -0.9 962,391 + ECD_00910 0.78 +0.2 962,429 - ECD_00910 0.83 -0.1 962,437 - ECD_00910 0.84 -2.2 962,571 + -0.3 962,681 + -0.6 962,682 - -2.8 962,684 + -1.3 962,715 + -0.6 962,715 + +0.5 962,719 - -4.0 962,719 - -4.8 962,719 - -1.7 962,783 + -2.5 962,841 + -3.7 962,842 - -4.4 962,941 + ECD_00911 0.18 -2.9 962,948 + ECD_00911 0.19 -3.9 962,948 + ECD_00911 0.19 -3.7 963,028 + ECD_00911 0.26 -4.6 963,175 + ECD_00911 0.40 -4.0 963,177 + ECD_00911 0.40 -5.0 963,178 - ECD_00911 0.40 -4.1 963,314 + ECD_00911 0.52 -2.2 963,314 + ECD_00911 0.52 -3.7 963,315 - ECD_00911 0.53 -2.6 963,481 + ECD_00911 0.68 -3.9 963,482 - ECD_00911 0.68 -4.8 963,482 - ECD_00911 0.68 -1.7 963,569 + ECD_00911 0.76 -5.0 963,569 + ECD_00911 0.76 -3.9 963,569 + ECD_00911 0.76 -2.5 963,571 + ECD_00911 0.76 -4.2 963,759 + -5.5 963,919 - -1.0 963,950 - -2.3 964,071 + ECD_00912 0.13 -0.3 964,091 + ECD_00912 0.15 -3.2 964,093 + ECD_00912 0.15 +1.7 964,261 + ECD_00912 0.28 -0.5 964,459 + ECD_00912 0.43 +0.4 964,460 - ECD_00912 0.43 -0.9 964,471 + ECD_00912 0.44 -1.2 964,610 + ECD_00912 0.55 -3.2 964,611 - ECD_00912 0.55 -1.5 964,781 - ECD_00912 0.68 -1.9
Or see this region's nucleotide sequence