Strain Fitness in Escherichia coli BL21 around ECD_t00062

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03395 and ECD_t00062 are separated by 910 nucleotidesECD_t00062 and ECD_03396 are separated by 91 nucleotides ECD_03395: ECD_03395 - dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor, at 3,568,252 to 3,569,859 _03395 ECD_t00062: ECD_t00062 - tRNA-Pro, at 3,570,770 to 3,570,846 _t00062 ECD_03396: ECD_03396 - KDO phosphoethanolamine transferase, Ca(2+)-inducible, at 3,570,938 to 3,572,629 _03396 Position (kb) 3570 3571Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3569.860 kb on + strandat 3569.891 kb on + strandat 3569.955 kb on + strandat 3569.955 kb on + strandat 3569.956 kb on - strandat 3569.956 kb on - strandat 3569.956 kb on - strandat 3569.977 kb on - strandat 3569.980 kb on + strandat 3569.991 kb on + strandat 3570.011 kb on - strandat 3570.029 kb on + strandat 3570.029 kb on + strandat 3570.030 kb on - strandat 3570.061 kb on + strandat 3570.061 kb on + strandat 3570.079 kb on - strandat 3570.154 kb on - strandat 3570.249 kb on + strandat 3570.261 kb on + strandat 3570.311 kb on - strandat 3570.332 kb on - strandat 3570.500 kb on + strandat 3570.500 kb on + strandat 3570.501 kb on - strandat 3570.509 kb on + strandat 3570.613 kb on - strandat 3570.864 kb on - strandat 3570.893 kb on + strandat 3570.940 kb on - strandat 3571.016 kb on - strandat 3571.016 kb on - strandat 3571.017 kb on + strandat 3571.018 kb on - strandat 3571.040 kb on - strandat 3571.044 kb on + strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.045 kb on - strandat 3571.131 kb on + strand, within ECD_03396at 3571.131 kb on + strand, within ECD_03396at 3571.135 kb on + strand, within ECD_03396at 3571.136 kb on - strand, within ECD_03396at 3571.222 kb on + strand, within ECD_03396at 3571.223 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.249 kb on - strand, within ECD_03396at 3571.297 kb on + strand, within ECD_03396at 3571.298 kb on - strand, within ECD_03396at 3571.311 kb on + strand, within ECD_03396at 3571.311 kb on + strand, within ECD_03396at 3571.312 kb on - strand, within ECD_03396at 3571.329 kb on + strand, within ECD_03396at 3571.329 kb on + strand, within ECD_03396at 3571.330 kb on - strand, within ECD_03396at 3571.364 kb on - strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.375 kb on + strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.376 kb on - strand, within ECD_03396at 3571.422 kb on + strand, within ECD_03396at 3571.422 kb on + strand, within ECD_03396at 3571.423 kb on - strand, within ECD_03396at 3571.427 kb on - strand, within ECD_03396at 3571.465 kb on + strand, within ECD_03396at 3571.466 kb on - strand, within ECD_03396at 3571.506 kb on - strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.516 kb on + strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.517 kb on - strand, within ECD_03396at 3571.524 kb on - strand, within ECD_03396at 3571.540 kb on + strand, within ECD_03396at 3571.541 kb on - strand, within ECD_03396at 3571.599 kb on + strand, within ECD_03396at 3571.600 kb on - strand, within ECD_03396at 3571.622 kb on - strand, within ECD_03396at 3571.627 kb on - strand, within ECD_03396at 3571.699 kb on + strand, within ECD_03396at 3571.699 kb on + strand, within ECD_03396at 3571.700 kb on - strand, within ECD_03396at 3571.721 kb on + strand, within ECD_03396at 3571.721 kb on + strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.722 kb on - strand, within ECD_03396at 3571.767 kb on + strand, within ECD_03396at 3571.819 kb on + strand, within ECD_03396at 3571.837 kb on + strand, within ECD_03396at 3571.843 kb on + strand, within ECD_03396at 3571.844 kb on - strand, within ECD_03396at 3571.844 kb on - strand, within ECD_03396

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,569,860 + -0.3
3,569,891 + -0.3
3,569,955 + +0.4
3,569,955 + +0.2
3,569,956 - -2.9
3,569,956 - +0.2
3,569,956 - +0.3
3,569,977 - -1.0
3,569,980 + +0.5
3,569,991 + -0.1
3,570,011 - -1.2
3,570,029 + +0.2
3,570,029 + +0.8
3,570,030 - -2.0
3,570,061 + -0.0
3,570,061 + +0.3
3,570,079 - -0.0
3,570,154 - -0.1
3,570,249 + -0.4
3,570,261 + +1.5
3,570,311 - +0.0
3,570,332 - -2.2
3,570,500 + +1.6
3,570,500 + -0.4
3,570,501 - +0.1
3,570,509 + +0.1
3,570,613 - -0.2
3,570,864 - +0.4
3,570,893 + +0.0
3,570,940 - -0.3
3,571,016 - +0.2
3,571,016 - -0.3
3,571,017 + -1.0
3,571,018 - +0.2
3,571,040 - -1.7
3,571,044 + -0.2
3,571,045 - +1.1
3,571,045 - -0.5
3,571,045 - +0.7
3,571,045 - +0.3
3,571,045 - +0.6
3,571,131 + ECD_03396 0.11 -1.5
3,571,131 + ECD_03396 0.11 +1.8
3,571,135 + ECD_03396 0.12 +0.8
3,571,136 - ECD_03396 0.12 +0.4
3,571,222 + ECD_03396 0.17 +0.1
3,571,223 - ECD_03396 0.17 -0.4
3,571,249 - ECD_03396 0.18 +1.8
3,571,249 - ECD_03396 0.18 -0.2
3,571,249 - ECD_03396 0.18 +0.3
3,571,249 - ECD_03396 0.18 -0.4
3,571,249 - ECD_03396 0.18 +0.3
3,571,297 + ECD_03396 0.21 -0.9
3,571,298 - ECD_03396 0.21 -1.2
3,571,311 + ECD_03396 0.22 -0.4
3,571,311 + ECD_03396 0.22 +0.9
3,571,312 - ECD_03396 0.22 -0.4
3,571,329 + ECD_03396 0.23 +0.2
3,571,329 + ECD_03396 0.23 +0.3
3,571,330 - ECD_03396 0.23 +0.9
3,571,364 - ECD_03396 0.25 -0.7
3,571,375 + ECD_03396 0.26 +0.1
3,571,375 + ECD_03396 0.26 -0.5
3,571,375 + ECD_03396 0.26 +0.4
3,571,376 - ECD_03396 0.26 -1.9
3,571,376 - ECD_03396 0.26 -0.6
3,571,376 - ECD_03396 0.26 -0.7
3,571,376 - ECD_03396 0.26 +0.2
3,571,422 + ECD_03396 0.29 -0.0
3,571,422 + ECD_03396 0.29 -0.9
3,571,423 - ECD_03396 0.29 -1.7
3,571,427 - ECD_03396 0.29 -3.7
3,571,465 + ECD_03396 0.31 +0.2
3,571,466 - ECD_03396 0.31 -1.8
3,571,506 - ECD_03396 0.34 +0.4
3,571,516 + ECD_03396 0.34 +0.0
3,571,516 + ECD_03396 0.34 -0.2
3,571,516 + ECD_03396 0.34 +1.0
3,571,516 + ECD_03396 0.34 +0.5
3,571,516 + ECD_03396 0.34 -1.5
3,571,517 - ECD_03396 0.34 -3.0
3,571,517 - ECD_03396 0.34 -1.5
3,571,517 - ECD_03396 0.34 +1.2
3,571,517 - ECD_03396 0.34 -0.4
3,571,517 - ECD_03396 0.34 +0.1
3,571,517 - ECD_03396 0.34 -0.2
3,571,524 - ECD_03396 0.35 -0.1
3,571,540 + ECD_03396 0.36 +1.2
3,571,541 - ECD_03396 0.36 -0.4
3,571,599 + ECD_03396 0.39 +0.4
3,571,600 - ECD_03396 0.39 -0.8
3,571,622 - ECD_03396 0.40 -0.0
3,571,627 - ECD_03396 0.41 +0.0
3,571,699 + ECD_03396 0.45 -0.1
3,571,699 + ECD_03396 0.45 +0.1
3,571,700 - ECD_03396 0.45 +0.5
3,571,721 + ECD_03396 0.46 +0.0
3,571,721 + ECD_03396 0.46 -1.9
3,571,722 - ECD_03396 0.46 +1.3
3,571,722 - ECD_03396 0.46 -0.8
3,571,722 - ECD_03396 0.46 +1.0
3,571,767 + ECD_03396 0.49 +0.7
3,571,819 + ECD_03396 0.52 -0.6
3,571,837 + ECD_03396 0.53 +0.1
3,571,843 + ECD_03396 0.53 +0.4
3,571,844 - ECD_03396 0.54 -0.0
3,571,844 - ECD_03396 0.54 -0.3

Or see this region's nucleotide sequence