Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03395 and ECD_t00062 are separated by 910 nucleotides ECD_t00062 and ECD_03396 are separated by 91 nucleotides
ECD_03395: ECD_03395 - dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor, at 3,568,252 to 3,569,859
_03395
ECD_t00062: ECD_t00062 - tRNA-Pro, at 3,570,770 to 3,570,846
_t00062
ECD_03396: ECD_03396 - KDO phosphoethanolamine transferase, Ca(2+)-inducible, at 3,570,938 to 3,572,629
_03396
Position (kb)
3570
3571 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3569.860 kb on + strand at 3569.891 kb on + strand at 3569.955 kb on + strand at 3569.955 kb on + strand at 3569.956 kb on - strand at 3569.956 kb on - strand at 3569.956 kb on - strand at 3569.977 kb on - strand at 3569.980 kb on + strand at 3569.991 kb on + strand at 3570.011 kb on - strand at 3570.029 kb on + strand at 3570.029 kb on + strand at 3570.030 kb on - strand at 3570.061 kb on + strand at 3570.061 kb on + strand at 3570.079 kb on - strand at 3570.154 kb on - strand at 3570.249 kb on + strand at 3570.261 kb on + strand at 3570.311 kb on - strand at 3570.332 kb on - strand at 3570.500 kb on + strand at 3570.500 kb on + strand at 3570.501 kb on - strand at 3570.509 kb on + strand at 3570.613 kb on - strand at 3570.864 kb on - strand at 3570.893 kb on + strand at 3570.940 kb on - strand at 3571.016 kb on - strand at 3571.016 kb on - strand at 3571.017 kb on + strand at 3571.018 kb on - strand at 3571.040 kb on - strand at 3571.044 kb on + strand at 3571.045 kb on - strand at 3571.045 kb on - strand at 3571.045 kb on - strand at 3571.045 kb on - strand at 3571.045 kb on - strand at 3571.131 kb on + strand, within ECD_03396 at 3571.131 kb on + strand, within ECD_03396 at 3571.135 kb on + strand, within ECD_03396 at 3571.136 kb on - strand, within ECD_03396 at 3571.222 kb on + strand, within ECD_03396 at 3571.223 kb on - strand, within ECD_03396 at 3571.249 kb on - strand, within ECD_03396 at 3571.249 kb on - strand, within ECD_03396 at 3571.249 kb on - strand, within ECD_03396 at 3571.249 kb on - strand, within ECD_03396 at 3571.249 kb on - strand, within ECD_03396 at 3571.297 kb on + strand, within ECD_03396 at 3571.298 kb on - strand, within ECD_03396 at 3571.311 kb on + strand, within ECD_03396 at 3571.311 kb on + strand, within ECD_03396 at 3571.312 kb on - strand, within ECD_03396 at 3571.329 kb on + strand, within ECD_03396 at 3571.329 kb on + strand, within ECD_03396 at 3571.330 kb on - strand, within ECD_03396 at 3571.364 kb on - strand, within ECD_03396 at 3571.375 kb on + strand, within ECD_03396 at 3571.375 kb on + strand, within ECD_03396 at 3571.375 kb on + strand, within ECD_03396 at 3571.376 kb on - strand, within ECD_03396 at 3571.376 kb on - strand, within ECD_03396 at 3571.376 kb on - strand, within ECD_03396 at 3571.376 kb on - strand, within ECD_03396 at 3571.422 kb on + strand, within ECD_03396 at 3571.422 kb on + strand, within ECD_03396 at 3571.423 kb on - strand, within ECD_03396 at 3571.427 kb on - strand, within ECD_03396 at 3571.465 kb on + strand, within ECD_03396 at 3571.466 kb on - strand, within ECD_03396 at 3571.506 kb on - strand, within ECD_03396 at 3571.516 kb on + strand, within ECD_03396 at 3571.516 kb on + strand, within ECD_03396 at 3571.516 kb on + strand, within ECD_03396 at 3571.516 kb on + strand, within ECD_03396 at 3571.516 kb on + strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.517 kb on - strand, within ECD_03396 at 3571.524 kb on - strand, within ECD_03396 at 3571.540 kb on + strand, within ECD_03396 at 3571.541 kb on - strand, within ECD_03396 at 3571.599 kb on + strand, within ECD_03396 at 3571.600 kb on - strand, within ECD_03396 at 3571.622 kb on - strand, within ECD_03396 at 3571.627 kb on - strand, within ECD_03396 at 3571.699 kb on + strand, within ECD_03396 at 3571.699 kb on + strand, within ECD_03396 at 3571.700 kb on - strand, within ECD_03396 at 3571.721 kb on + strand, within ECD_03396 at 3571.721 kb on + strand, within ECD_03396 at 3571.722 kb on - strand, within ECD_03396 at 3571.722 kb on - strand, within ECD_03396 at 3571.722 kb on - strand, within ECD_03396 at 3571.767 kb on + strand, within ECD_03396 at 3571.819 kb on + strand, within ECD_03396 at 3571.837 kb on + strand, within ECD_03396 at 3571.843 kb on + strand, within ECD_03396 at 3571.844 kb on - strand, within ECD_03396 at 3571.844 kb on - strand, within ECD_03396
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 3,569,860 + -0.3 3,569,891 + -0.3 3,569,955 + +0.4 3,569,955 + +0.2 3,569,956 - -2.9 3,569,956 - +0.2 3,569,956 - +0.3 3,569,977 - -1.0 3,569,980 + +0.5 3,569,991 + -0.1 3,570,011 - -1.2 3,570,029 + +0.2 3,570,029 + +0.8 3,570,030 - -2.0 3,570,061 + -0.0 3,570,061 + +0.3 3,570,079 - -0.0 3,570,154 - -0.1 3,570,249 + -0.4 3,570,261 + +1.5 3,570,311 - +0.0 3,570,332 - -2.2 3,570,500 + +1.6 3,570,500 + -0.4 3,570,501 - +0.1 3,570,509 + +0.1 3,570,613 - -0.2 3,570,864 - +0.4 3,570,893 + +0.0 3,570,940 - -0.3 3,571,016 - +0.2 3,571,016 - -0.3 3,571,017 + -1.0 3,571,018 - +0.2 3,571,040 - -1.7 3,571,044 + -0.2 3,571,045 - +1.1 3,571,045 - -0.5 3,571,045 - +0.7 3,571,045 - +0.3 3,571,045 - +0.6 3,571,131 + ECD_03396 0.11 -1.5 3,571,131 + ECD_03396 0.11 +1.8 3,571,135 + ECD_03396 0.12 +0.8 3,571,136 - ECD_03396 0.12 +0.4 3,571,222 + ECD_03396 0.17 +0.1 3,571,223 - ECD_03396 0.17 -0.4 3,571,249 - ECD_03396 0.18 +1.8 3,571,249 - ECD_03396 0.18 -0.2 3,571,249 - ECD_03396 0.18 +0.3 3,571,249 - ECD_03396 0.18 -0.4 3,571,249 - ECD_03396 0.18 +0.3 3,571,297 + ECD_03396 0.21 -0.9 3,571,298 - ECD_03396 0.21 -1.2 3,571,311 + ECD_03396 0.22 -0.4 3,571,311 + ECD_03396 0.22 +0.9 3,571,312 - ECD_03396 0.22 -0.4 3,571,329 + ECD_03396 0.23 +0.2 3,571,329 + ECD_03396 0.23 +0.3 3,571,330 - ECD_03396 0.23 +0.9 3,571,364 - ECD_03396 0.25 -0.7 3,571,375 + ECD_03396 0.26 +0.1 3,571,375 + ECD_03396 0.26 -0.5 3,571,375 + ECD_03396 0.26 +0.4 3,571,376 - ECD_03396 0.26 -1.9 3,571,376 - ECD_03396 0.26 -0.6 3,571,376 - ECD_03396 0.26 -0.7 3,571,376 - ECD_03396 0.26 +0.2 3,571,422 + ECD_03396 0.29 -0.0 3,571,422 + ECD_03396 0.29 -0.9 3,571,423 - ECD_03396 0.29 -1.7 3,571,427 - ECD_03396 0.29 -3.7 3,571,465 + ECD_03396 0.31 +0.2 3,571,466 - ECD_03396 0.31 -1.8 3,571,506 - ECD_03396 0.34 +0.4 3,571,516 + ECD_03396 0.34 +0.0 3,571,516 + ECD_03396 0.34 -0.2 3,571,516 + ECD_03396 0.34 +1.0 3,571,516 + ECD_03396 0.34 +0.5 3,571,516 + ECD_03396 0.34 -1.5 3,571,517 - ECD_03396 0.34 -3.0 3,571,517 - ECD_03396 0.34 -1.5 3,571,517 - ECD_03396 0.34 +1.2 3,571,517 - ECD_03396 0.34 -0.4 3,571,517 - ECD_03396 0.34 +0.1 3,571,517 - ECD_03396 0.34 -0.2 3,571,524 - ECD_03396 0.35 -0.1 3,571,540 + ECD_03396 0.36 +1.2 3,571,541 - ECD_03396 0.36 -0.4 3,571,599 + ECD_03396 0.39 +0.4 3,571,600 - ECD_03396 0.39 -0.8 3,571,622 - ECD_03396 0.40 -0.0 3,571,627 - ECD_03396 0.41 +0.0 3,571,699 + ECD_03396 0.45 -0.1 3,571,699 + ECD_03396 0.45 +0.1 3,571,700 - ECD_03396 0.45 +0.5 3,571,721 + ECD_03396 0.46 +0.0 3,571,721 + ECD_03396 0.46 -1.9 3,571,722 - ECD_03396 0.46 +1.3 3,571,722 - ECD_03396 0.46 -0.8 3,571,722 - ECD_03396 0.46 +1.0 3,571,767 + ECD_03396 0.49 +0.7 3,571,819 + ECD_03396 0.52 -0.6 3,571,837 + ECD_03396 0.53 +0.1 3,571,843 + ECD_03396 0.53 +0.4 3,571,844 - ECD_03396 0.54 -0.0 3,571,844 - ECD_03396 0.54 -0.3
Or see this region's nucleotide sequence