Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00484 and ECD_00485 are separated by 2 nucleotides ECD_00485 and ECD_t00007 are separated by 242 nucleotides ECD_t00007 and ECD_00486 are separated by 15 nucleotides
ECD_00484: ECD_00484 - FimA-like protein, at 532,423 to 532,938
_00484
ECD_00485: ECD_00485 - response regulator family protein, at 532,941 to 533,573
_00485
ECD_t00007: ECD_t00007 - tRNA-Arg, at 533,816 to 533,892
_t00007
ECD_00486: ECD_00486 - DLP12 prophage; putative phage integrase, at 533,908 to 535,071
_00486
Position (kb) 533
534 Strain fitness (log2 ratio) -2
-1
0
1 at 532.865 kb on - strand, within ECD_00484 at 533.534 kb on + strand at 533.949 kb on + strand at 533.961 kb on + strand at 534.026 kb on + strand, within ECD_00486 at 534.026 kb on + strand, within ECD_00486 at 534.031 kb on - strand, within ECD_00486 at 534.252 kb on + strand, within ECD_00486 at 534.253 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.257 kb on - strand, within ECD_00486 at 534.303 kb on + strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.304 kb on - strand, within ECD_00486 at 534.412 kb on + strand, within ECD_00486 at 534.413 kb on - strand, within ECD_00486 at 534.548 kb on - strand, within ECD_00486 at 534.613 kb on + strand, within ECD_00486 at 534.794 kb on - strand, within ECD_00486
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 532,865 - ECD_00484 0.86 -0.5 533,534 + -0.5 533,949 + +0.4 533,961 + +0.2 534,026 + ECD_00486 0.10 -1.4 534,026 + ECD_00486 0.10 +0.8 534,031 - ECD_00486 0.11 +0.7 534,252 + ECD_00486 0.30 -1.5 534,253 - ECD_00486 0.30 +0.3 534,257 - ECD_00486 0.30 +1.1 534,257 - ECD_00486 0.30 +0.8 534,257 - ECD_00486 0.30 +0.1 534,257 - ECD_00486 0.30 -0.5 534,257 - ECD_00486 0.30 -0.3 534,303 + ECD_00486 0.34 +0.3 534,304 - ECD_00486 0.34 +1.5 534,304 - ECD_00486 0.34 -1.5 534,412 + ECD_00486 0.43 -0.5 534,413 - ECD_00486 0.43 -0.3 534,548 - ECD_00486 0.55 -2.1 534,613 + ECD_00486 0.61 +0.5 534,794 - ECD_00486 0.76 -0.8
Or see this region's nucleotide sequence