Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03678 and ECD_03679 are separated by 21 nucleotides ECD_03679 and ECD_03680 overlap by 4 nucleotides
ECD_03678: ECD_03678 - putative uroporphyrinogen III methyltransferase, at 3,878,131 to 3,879,336
_03678
ECD_03679: ECD_03679 - uroporphyrinogen III synthase, at 3,879,358 to 3,880,098
_03679
ECD_03680: ECD_03680 - hydroxymethylbilane synthase, at 3,880,095 to 3,881,036
_03680
Position (kb)
3879
3880
3881 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3878.388 kb on - strand, within ECD_03678 at 3878.388 kb on - strand, within ECD_03678 at 3878.390 kb on + strand, within ECD_03678 at 3878.390 kb on + strand, within ECD_03678 at 3878.391 kb on - strand, within ECD_03678 at 3878.391 kb on - strand, within ECD_03678 at 3878.398 kb on + strand, within ECD_03678 at 3878.432 kb on + strand, within ECD_03678 at 3878.504 kb on + strand, within ECD_03678 at 3878.504 kb on + strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.505 kb on - strand, within ECD_03678 at 3878.509 kb on - strand, within ECD_03678 at 3878.965 kb on - strand, within ECD_03678 at 3879.173 kb on + strand, within ECD_03678 at 3879.173 kb on + strand, within ECD_03678 at 3879.174 kb on - strand, within ECD_03678 at 3879.351 kb on - strand at 3879.359 kb on + strand at 3879.360 kb on - strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.364 kb on + strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.365 kb on - strand at 3879.374 kb on - strand at 3880.118 kb on - strand at 3881.044 kb on - strand at 3881.053 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 3,878,388 - ECD_03678 0.21 -0.4 3,878,388 - ECD_03678 0.21 +0.2 3,878,390 + ECD_03678 0.21 -1.8 3,878,390 + ECD_03678 0.21 -0.4 3,878,391 - ECD_03678 0.22 -1.5 3,878,391 - ECD_03678 0.22 -2.8 3,878,398 + ECD_03678 0.22 -0.4 3,878,432 + ECD_03678 0.25 -0.5 3,878,504 + ECD_03678 0.31 -2.2 3,878,504 + ECD_03678 0.31 +0.2 3,878,505 - ECD_03678 0.31 +0.8 3,878,505 - ECD_03678 0.31 -0.2 3,878,505 - ECD_03678 0.31 -1.4 3,878,505 - ECD_03678 0.31 +0.1 3,878,505 - ECD_03678 0.31 -2.4 3,878,505 - ECD_03678 0.31 +0.2 3,878,509 - ECD_03678 0.31 +0.2 3,878,965 - ECD_03678 0.69 -0.1 3,879,173 + ECD_03678 0.86 +0.4 3,879,173 + ECD_03678 0.86 -2.0 3,879,174 - ECD_03678 0.86 -0.4 3,879,351 - +0.1 3,879,359 + +0.0 3,879,360 - -2.4 3,879,364 + +0.6 3,879,364 + +1.0 3,879,364 + -0.4 3,879,364 + -1.0 3,879,365 - -0.0 3,879,365 - +0.3 3,879,365 - +0.7 3,879,365 - -1.2 3,879,374 - -1.9 3,880,118 - -0.7 3,881,044 - -0.0 3,881,053 - +0.9
Or see this region's nucleotide sequence