Strain Fitness in Escherichia coli BL21 around ECD_03588

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03586 and ECD_03587 are separated by 16 nucleotidesECD_03587 and ECD_03588 overlap by 37 nucleotidesECD_03588 and ECD_03589 are separated by 2 nucleotides ECD_03586: ECD_03586 - 50S ribosomal subunit protein L34, at 3,773,132 to 3,773,272 _03586 ECD_03587: ECD_03587 - protein C5 component of RNase P, at 3,773,289 to 3,773,648 _03587 ECD_03588: ECD_03588 - membrane protein insertion efficiency factor, UPF0161 family inner membrane protein, at 3,773,612 to 3,773,869 _03588 ECD_03589: ECD_03589 - membrane protein insertase, at 3,773,872 to 3,775,518 _03589 Position (kb) 3773 3774Strain fitness (log2 ratio) -2 -1 0 1at 3772.641 kb on - strandat 3772.641 kb on - strandat 3772.643 kb on - strandat 3772.643 kb on - strandat 3772.643 kb on - strandat 3772.763 kb on - strandat 3772.763 kb on - strandat 3772.800 kb on - strandat 3772.829 kb on + strandat 3772.829 kb on + strandat 3772.830 kb on - strandat 3772.858 kb on - strandat 3772.899 kb on - strandat 3772.900 kb on + strandat 3772.901 kb on - strandat 3772.985 kb on - strandat 3772.989 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,772,641 - -1.5
3,772,641 - -0.4
3,772,643 - -0.0
3,772,643 - +0.1
3,772,643 - -2.6
3,772,763 - +0.1
3,772,763 - +0.7
3,772,800 - +0.2
3,772,829 + -0.2
3,772,829 + -0.5
3,772,830 - -0.6
3,772,858 - +0.2
3,772,899 - -1.1
3,772,900 + -0.8
3,772,901 - -1.0
3,772,985 - +0.2
3,772,989 - +0.3

Or see this region's nucleotide sequence