Strain Fitness in Escherichia coli BL21 around ECD_03518

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03517 and ECD_03518 are separated by 142 nucleotidesECD_03518 and ECD_03519 are separated by 24 nucleotides ECD_03517: ECD_03517 - ShiA-like protein, at 3,705,688 to 3,706,731 _03517 ECD_03518: ECD_03518 - hypothetical protein, at 3,706,874 to 3,707,104 _03518 ECD_03519: ECD_03519 - putative transcriptional regulator, at 3,707,129 to 3,708,223 _03519 Position (kb) 3706 3707 3708Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 3705.876 kb on + strand, within ECD_03517at 3705.876 kb on + strand, within ECD_03517at 3705.877 kb on - strand, within ECD_03517at 3705.878 kb on + strand, within ECD_03517at 3705.879 kb on - strand, within ECD_03517at 3705.879 kb on - strand, within ECD_03517at 3705.879 kb on - strand, within ECD_03517at 3705.945 kb on + strand, within ECD_03517at 3705.946 kb on - strand, within ECD_03517at 3706.070 kb on + strand, within ECD_03517at 3706.071 kb on - strand, within ECD_03517at 3706.117 kb on + strand, within ECD_03517at 3706.117 kb on + strand, within ECD_03517at 3706.117 kb on + strand, within ECD_03517at 3706.117 kb on + strand, within ECD_03517at 3706.117 kb on + strand, within ECD_03517at 3706.118 kb on - strand, within ECD_03517at 3706.118 kb on - strand, within ECD_03517at 3706.118 kb on - strand, within ECD_03517at 3706.132 kb on - strand, within ECD_03517at 3706.203 kb on - strand, within ECD_03517at 3706.240 kb on + strand, within ECD_03517at 3706.324 kb on + strand, within ECD_03517at 3706.324 kb on + strand, within ECD_03517at 3706.325 kb on - strand, within ECD_03517at 3706.325 kb on - strand, within ECD_03517at 3706.325 kb on - strand, within ECD_03517at 3706.414 kb on + strand, within ECD_03517at 3706.414 kb on + strand, within ECD_03517at 3706.415 kb on - strand, within ECD_03517at 3706.417 kb on + strand, within ECD_03517at 3706.418 kb on - strand, within ECD_03517at 3706.418 kb on - strand, within ECD_03517at 3706.426 kb on + strand, within ECD_03517at 3706.426 kb on + strand, within ECD_03517at 3706.427 kb on - strand, within ECD_03517at 3706.427 kb on - strand, within ECD_03517at 3706.427 kb on - strand, within ECD_03517at 3706.663 kb on + strandat 3706.719 kb on - strandat 3706.730 kb on - strandat 3706.837 kb on - strandat 3707.087 kb on - strandat 3707.202 kb on - strandat 3707.202 kb on - strandat 3707.252 kb on + strand, within ECD_03519at 3707.252 kb on + strand, within ECD_03519at 3707.253 kb on - strand, within ECD_03519at 3707.267 kb on + strand, within ECD_03519at 3707.267 kb on + strand, within ECD_03519at 3707.268 kb on - strand, within ECD_03519at 3707.272 kb on + strand, within ECD_03519at 3707.272 kb on + strand, within ECD_03519at 3707.272 kb on + strand, within ECD_03519at 3707.272 kb on + strand, within ECD_03519at 3707.273 kb on - strand, within ECD_03519at 3707.273 kb on - strand, within ECD_03519at 3707.276 kb on + strand, within ECD_03519at 3707.276 kb on + strand, within ECD_03519at 3707.277 kb on - strand, within ECD_03519at 3707.306 kb on + strand, within ECD_03519at 3707.307 kb on - strand, within ECD_03519at 3707.307 kb on - strand, within ECD_03519at 3707.312 kb on + strand, within ECD_03519at 3707.313 kb on - strand, within ECD_03519at 3707.313 kb on - strand, within ECD_03519at 3707.321 kb on - strand, within ECD_03519at 3707.336 kb on + strand, within ECD_03519at 3707.336 kb on + strand, within ECD_03519at 3707.337 kb on - strand, within ECD_03519at 3707.417 kb on - strand, within ECD_03519at 3707.422 kb on + strand, within ECD_03519at 3707.471 kb on - strand, within ECD_03519at 3707.485 kb on + strand, within ECD_03519at 3707.540 kb on - strand, within ECD_03519at 3707.596 kb on + strand, within ECD_03519at 3707.625 kb on + strand, within ECD_03519at 3707.626 kb on - strand, within ECD_03519at 3707.641 kb on + strand, within ECD_03519at 3707.737 kb on + strand, within ECD_03519at 3707.738 kb on - strand, within ECD_03519at 3707.798 kb on + strand, within ECD_03519at 3707.798 kb on + strand, within ECD_03519at 3707.815 kb on + strand, within ECD_03519at 3707.878 kb on + strand, within ECD_03519at 3707.879 kb on - strand, within ECD_03519

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,705,876 + ECD_03517 0.18 +0.1
3,705,876 + ECD_03517 0.18 +0.3
3,705,877 - ECD_03517 0.18 +0.5
3,705,878 + ECD_03517 0.18 -0.1
3,705,879 - ECD_03517 0.18 -1.0
3,705,879 - ECD_03517 0.18 +0.2
3,705,879 - ECD_03517 0.18 +0.9
3,705,945 + ECD_03517 0.25 +0.1
3,705,946 - ECD_03517 0.25 +0.3
3,706,070 + ECD_03517 0.37 -1.1
3,706,071 - ECD_03517 0.37 -0.2
3,706,117 + ECD_03517 0.41 +0.5
3,706,117 + ECD_03517 0.41 -0.5
3,706,117 + ECD_03517 0.41 +0.3
3,706,117 + ECD_03517 0.41 +0.5
3,706,117 + ECD_03517 0.41 +1.1
3,706,118 - ECD_03517 0.41 +0.2
3,706,118 - ECD_03517 0.41 +0.5
3,706,118 - ECD_03517 0.41 +0.2
3,706,132 - ECD_03517 0.43 -0.8
3,706,203 - ECD_03517 0.49 -0.5
3,706,240 + ECD_03517 0.53 +0.8
3,706,324 + ECD_03517 0.61 +0.3
3,706,324 + ECD_03517 0.61 +1.3
3,706,325 - ECD_03517 0.61 -0.3
3,706,325 - ECD_03517 0.61 +0.5
3,706,325 - ECD_03517 0.61 +0.9
3,706,414 + ECD_03517 0.70 +0.9
3,706,414 + ECD_03517 0.70 +4.8
3,706,415 - ECD_03517 0.70 -0.8
3,706,417 + ECD_03517 0.70 +0.7
3,706,418 - ECD_03517 0.70 +0.3
3,706,418 - ECD_03517 0.70 -0.5
3,706,426 + ECD_03517 0.71 +0.1
3,706,426 + ECD_03517 0.71 +0.2
3,706,427 - ECD_03517 0.71 -0.3
3,706,427 - ECD_03517 0.71 -0.2
3,706,427 - ECD_03517 0.71 -0.1
3,706,663 + -0.7
3,706,719 - +0.3
3,706,730 - +0.9
3,706,837 - +0.6
3,707,087 - -0.1
3,707,202 - +0.3
3,707,202 - -1.1
3,707,252 + ECD_03519 0.11 +0.7
3,707,252 + ECD_03519 0.11 -1.6
3,707,253 - ECD_03519 0.11 -0.3
3,707,267 + ECD_03519 0.13 -0.0
3,707,267 + ECD_03519 0.13 +0.0
3,707,268 - ECD_03519 0.13 -1.6
3,707,272 + ECD_03519 0.13 +2.3
3,707,272 + ECD_03519 0.13 -0.1
3,707,272 + ECD_03519 0.13 +0.8
3,707,272 + ECD_03519 0.13 -0.5
3,707,273 - ECD_03519 0.13 -0.6
3,707,273 - ECD_03519 0.13 -0.5
3,707,276 + ECD_03519 0.13 -0.5
3,707,276 + ECD_03519 0.13 +0.7
3,707,277 - ECD_03519 0.14 +0.5
3,707,306 + ECD_03519 0.16 +0.3
3,707,307 - ECD_03519 0.16 +0.4
3,707,307 - ECD_03519 0.16 -0.2
3,707,312 + ECD_03519 0.17 -3.8
3,707,313 - ECD_03519 0.17 +0.7
3,707,313 - ECD_03519 0.17 -0.2
3,707,321 - ECD_03519 0.18 +0.9
3,707,336 + ECD_03519 0.19 +0.9
3,707,336 + ECD_03519 0.19 +1.0
3,707,337 - ECD_03519 0.19 -0.5
3,707,417 - ECD_03519 0.26 -0.4
3,707,422 + ECD_03519 0.27 -0.5
3,707,471 - ECD_03519 0.31 +0.8
3,707,485 + ECD_03519 0.33 +0.7
3,707,540 - ECD_03519 0.38 +0.3
3,707,596 + ECD_03519 0.43 +1.3
3,707,625 + ECD_03519 0.45 +0.5
3,707,626 - ECD_03519 0.45 +0.3
3,707,641 + ECD_03519 0.47 -1.8
3,707,737 + ECD_03519 0.56 -1.3
3,707,738 - ECD_03519 0.56 -1.4
3,707,798 + ECD_03519 0.61 +1.2
3,707,798 + ECD_03519 0.61 -0.5
3,707,815 + ECD_03519 0.63 -0.2
3,707,878 + ECD_03519 0.68 +1.1
3,707,879 - ECD_03519 0.68 -0.5

Or see this region's nucleotide sequence