Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_03363 and ECD_03364 are separated by 367 nucleotides ECD_03364 and ECD_03365 are separated by 369 nucleotides
ECD_03363: ECD_03363 - transcriptional activator of gadA and gadBC; repressor of gadX, at 3,525,077 to 3,525,805
_03363
ECD_03364: ECD_03364 - acid resistance regulon transcriptional activator; autoactivator, at 3,526,173 to 3,526,997
_03364
ECD_03365: ECD_03365 - glutamate decarboxylase A, PLP-dependent, at 3,527,367 to 3,528,767
_03365
Position (kb)
3526
3527 Strain fitness (log2 ratio)
-2
-1
0
1 at 3525.191 kb on - strand, within ECD_03363 at 3525.191 kb on - strand, within ECD_03363 at 3525.193 kb on + strand, within ECD_03363 at 3525.193 kb on + strand, within ECD_03363 at 3525.194 kb on - strand, within ECD_03363 at 3525.319 kb on - strand, within ECD_03363 at 3525.371 kb on - strand, within ECD_03363 at 3525.374 kb on - strand, within ECD_03363 at 3525.374 kb on - strand, within ECD_03363 at 3525.585 kb on - strand, within ECD_03363 at 3525.835 kb on - strand at 3525.850 kb on + strand at 3526.182 kb on + strand at 3526.231 kb on + strand at 3526.232 kb on + strand at 3526.283 kb on - strand, within ECD_03364 at 3526.322 kb on - strand, within ECD_03364 at 3526.441 kb on + strand, within ECD_03364 at 3526.442 kb on - strand, within ECD_03364 at 3526.536 kb on - strand, within ECD_03364 at 3526.539 kb on - strand, within ECD_03364 at 3526.605 kb on - strand, within ECD_03364 at 3526.863 kb on - strand, within ECD_03364 at 3527.145 kb on - strand at 3527.287 kb on + strand at 3527.291 kb on - strand at 3527.302 kb on + strand at 3527.360 kb on + strand at 3527.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 3,525,191 - ECD_03363 0.16 -0.6 3,525,191 - ECD_03363 0.16 +0.1 3,525,193 + ECD_03363 0.16 -0.2 3,525,193 + ECD_03363 0.16 -0.1 3,525,194 - ECD_03363 0.16 -0.4 3,525,319 - ECD_03363 0.33 -0.2 3,525,371 - ECD_03363 0.40 +0.9 3,525,374 - ECD_03363 0.41 +0.0 3,525,374 - ECD_03363 0.41 +1.2 3,525,585 - ECD_03363 0.70 +1.1 3,525,835 - +0.1 3,525,850 + -0.8 3,526,182 + -0.1 3,526,231 + -0.6 3,526,232 + -0.4 3,526,283 - ECD_03364 0.13 -0.3 3,526,322 - ECD_03364 0.18 -0.7 3,526,441 + ECD_03364 0.32 +0.4 3,526,442 - ECD_03364 0.33 +0.0 3,526,536 - ECD_03364 0.44 +0.8 3,526,539 - ECD_03364 0.44 -0.6 3,526,605 - ECD_03364 0.52 -0.8 3,526,863 - ECD_03364 0.84 -1.8 3,527,145 - +1.4 3,527,287 + -0.8 3,527,291 - -0.2 3,527,302 + -0.1 3,527,360 + +0.1 3,527,360 + +0.1
Or see this region's nucleotide sequence