Strain Fitness in Escherichia coli BL21 around ECD_03311

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_03310 and ECD_03311 are separated by 244 nucleotidesECD_03311 and ECD_03312 overlap by 8 nucleotidesECD_03312 and ECD_03313 are separated by 2 nucleotides ECD_03310: ECD_03310 - RNA polymerase, sigma 32 (sigma H) factor, at 3,462,310 to 3,463,164 _03310 ECD_03311: ECD_03311 - putative ABC transporter permease, at 3,463,409 to 3,464,467 _03311 ECD_03312: ECD_03312 - cell division ATP-binding protein, at 3,464,460 to 3,465,128 _03312 ECD_03313: ECD_03313 - Signal Recognition Particle (SRP) receptor, at 3,465,131 to 3,466,627 _03313 Position (kb) 3463 3464 3465Strain fitness (log2 ratio) -1 0 1at 3463.205 kb on - strandat 3463.227 kb on - strandat 3463.227 kb on - strandat 3463.227 kb on - strandat 3463.324 kb on + strandat 3463.325 kb on - strandat 3463.325 kb on - strandat 3463.395 kb on - strandat 3463.395 kb on - strandat 3463.410 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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3,463,205 - +0.3
3,463,227 - +0.1
3,463,227 - -0.0
3,463,227 - -0.8
3,463,324 + +0.5
3,463,325 - +1.0
3,463,325 - -1.5
3,463,395 - -1.0
3,463,395 - +0.5
3,463,410 + +0.9

Or see this region's nucleotide sequence