Strain Fitness in Escherichia coli BL21 around ECD_02213

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_02211 and ECD_02212 are separated by 93 nucleotidesECD_02212 and ECD_02213 are separated by 15 nucleotidesECD_02213 and ECD_02214 are separated by 630 nucleotides ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109 _02211 ECD_02212: ECD_02212 - NADH:ubiquinone oxidoreductase, chain B, at 2,291,203 to 2,291,865 _02212 ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324 _02213 ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893 _02214 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2291.097 kb on + strandat 2291.142 kb on - strandat 2291.162 kb on - strandat 2291.229 kb on + strandat 2291.230 kb on - strandat 2291.230 kb on - strandat 2291.373 kb on - strand, within ECD_02212at 2291.403 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.405 kb on + strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.406 kb on - strand, within ECD_02212at 2291.455 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.460 kb on - strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.463 kb on + strand, within ECD_02212at 2291.525 kb on + strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.526 kb on - strand, within ECD_02212at 2291.612 kb on - strand, within ECD_02212at 2291.695 kb on - strand, within ECD_02212at 2291.727 kb on + strand, within ECD_02212at 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.856 kb on + strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.857 kb on - strandat 2291.858 kb on + strandat 2291.922 kb on + strandat 2291.979 kb on - strand, within ECD_02213at 2292.330 kb on - strandat 2292.330 kb on - strandat 2292.542 kb on + strandat 2292.584 kb on + strandat 2292.584 kb on + strandat 2292.585 kb on - strandat 2292.585 kb on - strandat 2292.851 kb on - strandat 2293.016 kb on + strandat 2293.016 kb on + strandat 2293.017 kb on - strandat 2293.017 kb on - strandat 2293.030 kb on - strandat 2293.034 kb on + strandat 2293.091 kb on + strand, within ECD_02214at 2293.244 kb on + strand, within ECD_02214at 2293.244 kb on + strand, within ECD_02214at 2293.264 kb on - strand, within ECD_02214at 2293.294 kb on - strand, within ECD_02214at 2293.324 kb on + strand, within ECD_02214at 2293.324 kb on + strand, within ECD_02214

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,291,097 + -1.3
2,291,142 - -1.5
2,291,162 - -2.5
2,291,229 + -2.1
2,291,230 - -1.1
2,291,230 - -1.2
2,291,373 - ECD_02212 0.26 -3.9
2,291,403 + ECD_02212 0.30 -1.3
2,291,405 + ECD_02212 0.30 -2.6
2,291,405 + ECD_02212 0.30 -1.6
2,291,406 - ECD_02212 0.31 -1.1
2,291,406 - ECD_02212 0.31 -2.5
2,291,406 - ECD_02212 0.31 -2.1
2,291,406 - ECD_02212 0.31 -0.6
2,291,455 - ECD_02212 0.38 -3.9
2,291,460 - ECD_02212 0.39 -1.8
2,291,460 - ECD_02212 0.39 -0.7
2,291,460 - ECD_02212 0.39 -3.1
2,291,460 - ECD_02212 0.39 -1.1
2,291,460 - ECD_02212 0.39 -2.6
2,291,463 + ECD_02212 0.39 +1.0
2,291,463 + ECD_02212 0.39 +0.8
2,291,525 + ECD_02212 0.49 +0.2
2,291,526 - ECD_02212 0.49 -2.9
2,291,526 - ECD_02212 0.49 -2.7
2,291,612 - ECD_02212 0.62 -2.8
2,291,695 - ECD_02212 0.74 -2.9
2,291,727 + ECD_02212 0.79 -0.7
2,291,856 + -0.3
2,291,856 + -1.9
2,291,856 + -4.2
2,291,857 - -2.3
2,291,857 - -1.6
2,291,857 - -1.1
2,291,858 + -0.6
2,291,922 + -2.5
2,291,979 - ECD_02213 0.22 -0.5
2,292,330 - +0.1
2,292,330 - -3.0
2,292,542 + -0.4
2,292,584 + -0.6
2,292,584 + -0.3
2,292,585 - +0.6
2,292,585 - +0.5
2,292,851 - -1.2
2,293,016 + -0.4
2,293,016 + +0.1
2,293,017 - -0.2
2,293,017 - -1.4
2,293,030 - +0.3
2,293,034 + +0.6
2,293,091 + ECD_02214 0.14 -0.0
2,293,244 + ECD_02214 0.31 +0.3
2,293,244 + ECD_02214 0.31 +0.2
2,293,264 - ECD_02214 0.33 -1.3
2,293,294 - ECD_02214 0.36 -0.2
2,293,324 + ECD_02214 0.39 -0.8
2,293,324 + ECD_02214 0.39 -0.8

Or see this region's nucleotide sequence