Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_02211 and ECD_02212 are separated by 93 nucleotides ECD_02212 and ECD_02213 are separated by 15 nucleotides ECD_02213 and ECD_02214 are separated by 630 nucleotides
ECD_02211: ECD_02211 - NADH:ubiquinone oxidoreductase, fused CD subunit, at 2,289,307 to 2,291,109
_02211
ECD_02212: ECD_02212 - NADH:ubiquinone oxidoreductase, chain B, at 2,291,203 to 2,291,865
_02212
ECD_02213: ECD_02213 - NADH:ubiquinone oxidoreductase, membrane subunit A, at 2,291,881 to 2,292,324
_02213
ECD_02214: ECD_02214 - transcriptional repressor of flagellar, motility and chemotaxis genes, at 2,292,955 to 2,293,893
_02214
Position (kb)
2291
2292
2293 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2291.097 kb on + strand at 2291.142 kb on - strand at 2291.162 kb on - strand at 2291.229 kb on + strand at 2291.230 kb on - strand at 2291.230 kb on - strand at 2291.373 kb on - strand, within ECD_02212 at 2291.403 kb on + strand, within ECD_02212 at 2291.405 kb on + strand, within ECD_02212 at 2291.405 kb on + strand, within ECD_02212 at 2291.406 kb on - strand, within ECD_02212 at 2291.406 kb on - strand, within ECD_02212 at 2291.406 kb on - strand, within ECD_02212 at 2291.406 kb on - strand, within ECD_02212 at 2291.455 kb on - strand, within ECD_02212 at 2291.460 kb on - strand, within ECD_02212 at 2291.460 kb on - strand, within ECD_02212 at 2291.460 kb on - strand, within ECD_02212 at 2291.460 kb on - strand, within ECD_02212 at 2291.460 kb on - strand, within ECD_02212 at 2291.463 kb on + strand, within ECD_02212 at 2291.463 kb on + strand, within ECD_02212 at 2291.525 kb on + strand, within ECD_02212 at 2291.526 kb on - strand, within ECD_02212 at 2291.526 kb on - strand, within ECD_02212 at 2291.612 kb on - strand, within ECD_02212 at 2291.695 kb on - strand, within ECD_02212 at 2291.727 kb on + strand, within ECD_02212 at 2291.856 kb on + strand at 2291.856 kb on + strand at 2291.856 kb on + strand at 2291.857 kb on - strand at 2291.857 kb on - strand at 2291.857 kb on - strand at 2291.858 kb on + strand at 2291.922 kb on + strand at 2291.979 kb on - strand, within ECD_02213 at 2292.330 kb on - strand at 2292.330 kb on - strand at 2292.542 kb on + strand at 2292.584 kb on + strand at 2292.584 kb on + strand at 2292.585 kb on - strand at 2292.585 kb on - strand at 2292.851 kb on - strand at 2293.016 kb on + strand at 2293.016 kb on + strand at 2293.017 kb on - strand at 2293.017 kb on - strand at 2293.030 kb on - strand at 2293.034 kb on + strand at 2293.091 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.244 kb on + strand, within ECD_02214 at 2293.264 kb on - strand, within ECD_02214 at 2293.294 kb on - strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214 at 2293.324 kb on + strand, within ECD_02214
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 2,291,097 + -1.3 2,291,142 - -1.5 2,291,162 - -2.5 2,291,229 + -2.1 2,291,230 - -1.1 2,291,230 - -1.2 2,291,373 - ECD_02212 0.26 -3.9 2,291,403 + ECD_02212 0.30 -1.3 2,291,405 + ECD_02212 0.30 -2.6 2,291,405 + ECD_02212 0.30 -1.6 2,291,406 - ECD_02212 0.31 -1.1 2,291,406 - ECD_02212 0.31 -2.5 2,291,406 - ECD_02212 0.31 -2.1 2,291,406 - ECD_02212 0.31 -0.6 2,291,455 - ECD_02212 0.38 -3.9 2,291,460 - ECD_02212 0.39 -1.8 2,291,460 - ECD_02212 0.39 -0.7 2,291,460 - ECD_02212 0.39 -3.1 2,291,460 - ECD_02212 0.39 -1.1 2,291,460 - ECD_02212 0.39 -2.6 2,291,463 + ECD_02212 0.39 +1.0 2,291,463 + ECD_02212 0.39 +0.8 2,291,525 + ECD_02212 0.49 +0.2 2,291,526 - ECD_02212 0.49 -2.9 2,291,526 - ECD_02212 0.49 -2.7 2,291,612 - ECD_02212 0.62 -2.8 2,291,695 - ECD_02212 0.74 -2.9 2,291,727 + ECD_02212 0.79 -0.7 2,291,856 + -0.3 2,291,856 + -1.9 2,291,856 + -4.2 2,291,857 - -2.3 2,291,857 - -1.6 2,291,857 - -1.1 2,291,858 + -0.6 2,291,922 + -2.5 2,291,979 - ECD_02213 0.22 -0.5 2,292,330 - +0.1 2,292,330 - -3.0 2,292,542 + -0.4 2,292,584 + -0.6 2,292,584 + -0.3 2,292,585 - +0.6 2,292,585 - +0.5 2,292,851 - -1.2 2,293,016 + -0.4 2,293,016 + +0.1 2,293,017 - -0.2 2,293,017 - -1.4 2,293,030 - +0.3 2,293,034 + +0.6 2,293,091 + ECD_02214 0.14 -0.0 2,293,244 + ECD_02214 0.31 +0.3 2,293,244 + ECD_02214 0.31 +0.2 2,293,264 - ECD_02214 0.33 -1.3 2,293,294 - ECD_02214 0.36 -0.2 2,293,324 + ECD_02214 0.39 -0.8 2,293,324 + ECD_02214 0.39 -0.8
Or see this region's nucleotide sequence