Strain Fitness in Escherichia coli BL21 around ECD_01940

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01938 and ECD_01939 overlap by 4 nucleotidesECD_01939 and ECD_01940 overlap by 1 nucleotidesECD_01940 and ECD_01941 overlap by 4 nucleotidesECD_01941 and ECD_01942 are separated by 142 nucleotides ECD_01938: ECD_01938 - O antigen polymerase (Wzy), at 2,002,756 to 2,003,931 _01938 ECD_01939: ECD_01939 - putative glycosyltransferase WbbB, at 2,003,928 to 2,004,749 _01939 ECD_01940: ECD_01940 - putative glycosyltransferase WbbA, at 2,004,749 to 2,005,495 _01940 ECD_01941: ECD_01941 - VioB, involved in dTDP-N-acetylviosamine synthesis, at 2,005,492 to 2,005,929 _01941 ECD_01942: ECD_01942 - VioA, involved in dTDP-N-acetylviosamine synthesis, at 2,006,072 to 2,007,184 _01942 Position (kb) 2004 2005 2006Strain fitness (log2 ratio) -1 0 1at 2005.691 kb on - strand, within ECD_01941

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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2,005,691 - ECD_01941 0.45 -0.8

Or see this region's nucleotide sequence