Strain Fitness in Escherichia coli BL21 around ECD_01776

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01775 and ECD_01776 are separated by 204 nucleotidesECD_01776 and ECD_01777 are separated by 39 nucleotidesECD_01777 and ECD_01778 are separated by 57 nucleotides ECD_01775: ECD_01775 - acyl-CoA synthetase (long-chain-fatty-acid--CoA ligase), at 1,833,787 to 1,835,472 _01775 ECD_01776: ECD_01776 - Slp family lipoprotein, RpoE-regulated, at 1,835,677 to 1,836,258 _01776 ECD_01777: ECD_01777 - tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein; binding partner and protease for TsaD, at 1,836,298 to 1,836,993 _01777 ECD_01778: ECD_01778 - putative ATP-dependent helicase, DinG family, at 1,837,051 to 1,838,961 _01778 Position (kb) 1835 1836 1837Strain fitness (log2 ratio) -1 0 1 2at 1835.329 kb on + strandat 1835.601 kb on - strandat 1836.108 kb on - strand, within ECD_01776at 1836.227 kb on - strandat 1836.227 kb on - strandat 1837.038 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
1,835,329 + +2.2
1,835,601 - +1.2
1,836,108 - ECD_01776 0.74 +0.2
1,836,227 - +0.2
1,836,227 - +0.0
1,837,038 - +0.0

Or see this region's nucleotide sequence