Strain Fitness in Escherichia coli BL21 around ECD_01583

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01582 and ECD_01583 are separated by 100 nucleotidesECD_01583 and ECD_01584 are separated by 225 nucleotides ECD_01582: ECD_01582 - mannose-6-phosphate isomerase, at 1,633,773 to 1,634,948 _01582 ECD_01583: ECD_01583 - DUF945 family protein, at 1,635,049 to 1,636,557 _01583 ECD_01584: ECD_01584 - putative outer membrane porin for beta-glucuronides porin protein, at 1,636,783 to 1,638,048 _01584 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -1 0 1 2at 1634.541 kb on + strand, within ECD_01582at 1634.762 kb on + strand, within ECD_01582at 1635.048 kb on + strandat 1635.054 kb on + strandat 1635.054 kb on + strandat 1636.463 kb on + strandat 1636.946 kb on - strand, within ECD_01584at 1637.177 kb on - strand, within ECD_01584at 1637.177 kb on - strand, within ECD_01584at 1637.302 kb on - strand, within ECD_01584

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,634,541 + ECD_01582 0.65 -1.2
1,634,762 + ECD_01582 0.84 -0.3
1,635,048 + +0.7
1,635,054 + -1.4
1,635,054 + +0.3
1,636,463 + +0.2
1,636,946 - ECD_01584 0.13 -0.5
1,637,177 - ECD_01584 0.31 +0.0
1,637,177 - ECD_01584 0.31 -0.1
1,637,302 - ECD_01584 0.41 +2.3

Or see this region's nucleotide sequence