Strain Fitness in Escherichia coli BL21 around ECD_01508

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_01506 and ECD_01507 are separated by 9 nucleotidesECD_01507 and ECD_01508 overlap by 1 nucleotidesECD_01508 and ECD_01524 are separated by 651 nucleotidesECD_01524 and ECD_01525 overlap by 4 nucleotides ECD_01506: ECD_01506 - hypothetical protein, at 1,584,039 to 1,584,743 _01506 ECD_01507: ECD_01507 - hypothetical protein, at 1,584,753 to 1,585,034 _01507 ECD_01508: ECD_01508 - Rac prophage; putative tail fiber protein, at 1,585,034 to 1,586,335 _01508 ECD_01524: ECD_01524 - putative transposase-related protein, at 1,586,987 to 1,587,295 _01524 ECD_01525: ECD_01525 - putative transposase for IS3, at 1,587,292 to 1,588,158 _01525 Position (kb) 1585 1586 1587Strain fitness (log2 ratio) -1 0 1at 1584.045 kb on - strandat 1584.373 kb on - strand, within ECD_01506at 1586.059 kb on + strand, within ECD_01508at 1586.178 kb on + strand, within ECD_01508

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
1,584,045 - +0.7
1,584,373 - ECD_01506 0.47 +0.8
1,586,059 + ECD_01508 0.79 -0.6
1,586,178 + ECD_01508 0.88 +0.4

Or see this region's nucleotide sequence