Strain Fitness in Escherichia coli BL21 around ECD_01271

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01269 and ECD_01270 overlap by 14 nucleotidesECD_01270 and ECD_01271 overlap by 4 nucleotidesECD_01271 and ECD_01272 are separated by 311 nucleotidesECD_01272 and ECD_01273 are separated by 133 nucleotides ECD_01269: ECD_01269 - antimicrobial peptide transport ABC transporter permease, at 1,339,995 to 1,340,885 _01269 ECD_01270: ECD_01270 - antimicrobial peptide transport ABC transporter permease, at 1,340,872 to 1,341,837 _01270 ECD_01271: ECD_01271 - antimicrobial peptide transport ABC transporter periplasmic binding protein, at 1,341,834 to 1,343,477 _01271 ECD_01272: ECD_01272 - DUF2543 family protein, at 1,343,789 to 1,344,034 _01272 ECD_01273: ECD_01273 - putrescine importer, at 1,344,168 to 1,345,553 _01273 Position (kb) 1341 1342 1343 1344Strain fitness (log2 ratio) -1 0 1 2at 1343.640 kb on - strandat 1343.640 kb on - strandat 1343.846 kb on - strand, within ECD_01272at 1344.203 kb on - strandat 1344.245 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,343,640 - -0.3
1,343,640 - -0.2
1,343,846 - ECD_01272 0.23 +2.2
1,344,203 - +0.0
1,344,245 - -0.9

Or see this region's nucleotide sequence