Strain Fitness in Escherichia coli BL21 around ECD_01251

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01250 and ECD_01251 are separated by 209 nucleotides ECD_01250: ECD_01250 - DNA topoisomerase I, omega subunit, at 1,317,418 to 1,320,015 _01250 ECD_01251: ECD_01251 - N-acetylserine-responsive cysteine regulon transcriptional activator; autorepressor, at 1,320,225 to 1,321,199 _01251 Position (kb) 1320 1321 1322Strain fitness (log2 ratio) -2 -1 0 1at 1319.722 kb on + strand, within ECD_01250at 1319.722 kb on + strand, within ECD_01250at 1319.889 kb on + strandat 1320.159 kb on + strandat 1321.464 kb on + strandat 1321.470 kb on + strandat 1321.660 kb on + strandat 1321.660 kb on + strandat 1321.660 kb on + strandat 1321.660 kb on + strandat 1321.705 kb on + strandat 1321.791 kb on + strandat 1321.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,319,722 + ECD_01250 0.89 +0.2
1,319,722 + ECD_01250 0.89 -2.3
1,319,889 + +0.5
1,320,159 + -0.1
1,321,464 + -1.3
1,321,470 + -0.0
1,321,660 + +0.1
1,321,660 + -0.2
1,321,660 + +0.6
1,321,660 + +1.7
1,321,705 + -0.7
1,321,791 + +0.3
1,321,941 + -0.2

Or see this region's nucleotide sequence