Strain Fitness in Escherichia coli BL21 around ECD_01197

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01195 and ECD_01196 are separated by 136 nucleotidesECD_01196 and ECD_01197 are separated by 43 nucleotidesECD_01197 and ECD_01198 are separated by 326 nucleotides ECD_01195: ECD_01195 - cation transport regulator, at 1,260,266 to 1,260,496 _01195 ECD_01196: ECD_01196 - cation transport regulator, at 1,260,633 to 1,261,349 _01196 ECD_01197: ECD_01197 - putative sulfur relay protein, at 1,261,393 to 1,261,746 _01197 ECD_01198: ECD_01198 - putative invasin, at 1,262,073 to 1,263,326 _01198 Position (kb) 1261 1262Strain fitness (log2 ratio) -1 0 1 2 3at 1260.632 kb on + strandat 1260.650 kb on + strandat 1260.978 kb on + strand, within ECD_01196at 1261.351 kb on + strandat 1261.471 kb on - strand, within ECD_01197at 1261.486 kb on - strand, within ECD_01197at 1262.043 kb on - strandat 1262.236 kb on + strand, within ECD_01198at 1262.236 kb on + strand, within ECD_01198

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,260,632 + -0.6
1,260,650 + +1.1
1,260,978 + ECD_01196 0.48 +0.7
1,261,351 + +1.6
1,261,471 - ECD_01197 0.22 -0.8
1,261,486 - ECD_01197 0.26 +0.4
1,262,043 - +3.2
1,262,236 + ECD_01198 0.13 -0.7
1,262,236 + ECD_01198 0.13 +0.4

Or see this region's nucleotide sequence