Strain Fitness in Escherichia coli BL21 around ECD_01194

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01192 and ECD_01193 are separated by 427 nucleotidesECD_01193 and ECD_01194 are separated by 404 nucleotidesECD_01194 and ECD_01195 are separated by 269 nucleotidesECD_01195 and ECD_01196 are separated by 136 nucleotides ECD_01192: ECD_01192 - toxic polypeptide, small, at 1,257,849 to 1,257,956 _01192 ECD_01193: ECD_01193 - toxic polypeptide, small, at 1,258,384 to 1,258,491 _01193 ECD_01194: ECD_01194 - calcium/sodium:proton antiporter, at 1,258,896 to 1,259,996 _01194 ECD_01195: ECD_01195 - cation transport regulator, at 1,260,266 to 1,260,496 _01195 ECD_01196: ECD_01196 - cation transport regulator, at 1,260,633 to 1,261,349 _01196 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -1 0 1at 1258.890 kb on + strandat 1259.890 kb on - strandat 1260.216 kb on + strandat 1260.236 kb on + strandat 1260.379 kb on + strand, within ECD_01195at 1260.632 kb on + strandat 1260.650 kb on + strandat 1260.978 kb on + strand, within ECD_01196

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,258,890 + +1.0
1,259,890 - -0.2
1,260,216 + -1.0
1,260,236 + +0.9
1,260,379 + ECD_01195 0.49 +0.2
1,260,632 + -0.6
1,260,650 + +1.1
1,260,978 + ECD_01196 0.48 +0.7

Or see this region's nucleotide sequence