Strain Fitness in Escherichia coli BL21 around ECD_01156

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01154 and ECD_01155 are separated by 71 nucleotidesECD_01155 and ECD_01156 are separated by 76 nucleotides ECD_01154: ECD_01154 - UPF0745 family protein, at 1,215,840 to 1,216,166 _01154 ECD_01155: ECD_01155 - putative isomerase/hydrolase, at 1,216,238 to 1,216,897 _01155 ECD_01156: ECD_01156 - UPF0153 family cysteine cluster protein, at 1,216,974 to 1,217,435 _01156 Position (kb) 1216 1217 1218Strain fitness (log2 ratio) -2 -1 0 1at 1216.237 kb on + strandat 1216.241 kb on + strandat 1216.241 kb on + strandat 1216.313 kb on + strand, within ECD_01155at 1216.324 kb on + strand, within ECD_01155at 1216.324 kb on + strand, within ECD_01155at 1216.717 kb on + strand, within ECD_01155at 1216.762 kb on + strand, within ECD_01155at 1216.762 kb on + strand, within ECD_01155at 1216.895 kb on + strandat 1216.956 kb on - strandat 1217.118 kb on + strand, within ECD_01156

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,216,237 + -0.1
1,216,241 + -0.3
1,216,241 + +0.5
1,216,313 + ECD_01155 0.11 +0.9
1,216,324 + ECD_01155 0.13 +1.1
1,216,324 + ECD_01155 0.13 -0.5
1,216,717 + ECD_01155 0.73 -0.5
1,216,762 + ECD_01155 0.79 -0.6
1,216,762 + ECD_01155 0.79 -1.8
1,216,895 + +0.0
1,216,956 - +1.0
1,217,118 + ECD_01156 0.31 +0.0

Or see this region's nucleotide sequence