Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01152 and ECD_01153 are separated by 102 nucleotides ECD_01153 and ECD_01154 are separated by 208 nucleotides ECD_01154 and ECD_01155 are separated by 71 nucleotides ECD_01155 and ECD_01156 are separated by 76 nucleotides
ECD_01152: ECD_01152 - uncharacterized protein, at 1,214,759 to 1,215,127
_01152
ECD_01153: ECD_01153 - periplasmic inhibitor of g-type lysozyme, at 1,215,230 to 1,215,631
_01153
ECD_01154: ECD_01154 - UPF0745 family protein, at 1,215,840 to 1,216,166
_01154
ECD_01155: ECD_01155 - putative isomerase/hydrolase, at 1,216,238 to 1,216,897
_01155
ECD_01156: ECD_01156 - UPF0153 family cysteine cluster protein, at 1,216,974 to 1,217,435
_01156
Position (kb)
1215
1216
1217 Strain fitness (log2 ratio)
-2
-1
0
1 at 1215.112 kb on + strand at 1215.477 kb on + strand, within ECD_01153 at 1215.477 kb on + strand, within ECD_01153 at 1215.756 kb on + strand at 1215.760 kb on + strand at 1215.762 kb on + strand at 1215.834 kb on + strand at 1216.237 kb on + strand at 1216.241 kb on + strand at 1216.241 kb on + strand at 1216.313 kb on + strand, within ECD_01155 at 1216.324 kb on + strand, within ECD_01155 at 1216.324 kb on + strand, within ECD_01155 at 1216.717 kb on + strand, within ECD_01155 at 1216.762 kb on + strand, within ECD_01155 at 1216.762 kb on + strand, within ECD_01155 at 1216.895 kb on + strand at 1216.956 kb on - strand at 1217.118 kb on + strand, within ECD_01156
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,215,112 + -1.0 1,215,477 + ECD_01153 0.61 +0.7 1,215,477 + ECD_01153 0.61 -0.1 1,215,756 + +0.9 1,215,760 + -0.4 1,215,762 + +0.4 1,215,834 + -1.8 1,216,237 + -0.1 1,216,241 + -0.3 1,216,241 + +0.5 1,216,313 + ECD_01155 0.11 +0.9 1,216,324 + ECD_01155 0.13 +1.1 1,216,324 + ECD_01155 0.13 -0.5 1,216,717 + ECD_01155 0.73 -0.5 1,216,762 + ECD_01155 0.79 -0.6 1,216,762 + ECD_01155 0.79 -1.8 1,216,895 + +0.0 1,216,956 - +1.0 1,217,118 + ECD_01156 0.31 +0.0
Or see this region's nucleotide sequence