Strain Fitness in Escherichia coli BL21 around ECD_01147

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_01146 and ECD_01147 are separated by 9 nucleotidesECD_01147 and ECD_01148 are separated by 706 nucleotides ECD_01146: ECD_01146 - uncharacterized protein, at 1,210,464 to 1,210,793 _01146 ECD_01147: ECD_01147 - UPF0757 family protein, at 1,210,803 to 1,211,147 _01147 ECD_01148: ECD_01148 - hypothetical protein, at 1,211,854 to 1,212,066 _01148 Position (kb) 1210 1211 1212Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1209.866 kb on - strandat 1210.932 kb on - strand, within ECD_01147at 1211.169 kb on - strandat 1211.436 kb on - strandat 1211.635 kb on - strandat 1211.723 kb on + strandat 1211.730 kb on + strandat 1211.730 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.770 kb on + strandat 1211.771 kb on - strandat 1211.771 kb on - strandat 1211.771 kb on - strandat 1211.771 kb on - strandat 1211.771 kb on - strandat 1211.771 kb on - strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.772 kb on + strandat 1211.773 kb on - strandat 1211.773 kb on - strandat 1211.773 kb on - strandat 1211.773 kb on - strandat 1211.773 kb on - strandat 1211.775 kb on - strandat 1211.905 kb on - strand, within ECD_01148at 1211.941 kb on + strand, within ECD_01148at 1211.978 kb on + strand, within ECD_01148at 1212.001 kb on + strand, within ECD_01148at 1212.001 kb on + strand, within ECD_01148at 1212.003 kb on + strand, within ECD_01148at 1212.003 kb on + strand, within ECD_01148

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,209,866 - +0.7
1,210,932 - ECD_01147 0.37 +0.8
1,211,169 - +0.4
1,211,436 - -0.0
1,211,635 - -1.2
1,211,723 + +0.8
1,211,730 + +1.2
1,211,730 + +0.9
1,211,770 + +0.0
1,211,770 + -1.5
1,211,770 + -1.3
1,211,770 + +0.6
1,211,770 + +0.6
1,211,770 + -2.8
1,211,770 + +0.4
1,211,771 - +0.1
1,211,771 - +0.9
1,211,771 - +0.7
1,211,771 - +1.8
1,211,771 - -2.5
1,211,771 - +1.8
1,211,772 + +1.4
1,211,772 + -0.1
1,211,772 + +0.7
1,211,772 + -0.6
1,211,772 + -1.5
1,211,772 + -0.8
1,211,772 + +0.9
1,211,772 + -0.2
1,211,772 + +0.9
1,211,772 + +0.6
1,211,772 + +0.5
1,211,772 + -0.4
1,211,772 + -1.1
1,211,772 + -2.2
1,211,773 - +0.3
1,211,773 - +0.0
1,211,773 - -0.6
1,211,773 - +0.8
1,211,773 - -0.5
1,211,775 - +0.1
1,211,905 - ECD_01148 0.24 +1.5
1,211,941 + ECD_01148 0.41 -2.2
1,211,978 + ECD_01148 0.58 +0.6
1,212,001 + ECD_01148 0.69 +0.6
1,212,001 + ECD_01148 0.69 +0.4
1,212,003 + ECD_01148 0.70 +1.6
1,212,003 + ECD_01148 0.70 +0.7

Or see this region's nucleotide sequence