Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_01146 and ECD_01147 are separated by 9 nucleotides ECD_01147 and ECD_01148 are separated by 706 nucleotides
ECD_01146: ECD_01146 - uncharacterized protein, at 1,210,464 to 1,210,793
_01146
ECD_01147: ECD_01147 - UPF0757 family protein, at 1,210,803 to 1,211,147
_01147
ECD_01148: ECD_01148 - hypothetical protein, at 1,211,854 to 1,212,066
_01148
Position (kb)
1210
1211
1212 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1209.866 kb on - strand at 1210.932 kb on - strand, within ECD_01147 at 1211.169 kb on - strand at 1211.436 kb on - strand at 1211.635 kb on - strand at 1211.723 kb on + strand at 1211.730 kb on + strand at 1211.730 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.770 kb on + strand at 1211.771 kb on - strand at 1211.771 kb on - strand at 1211.771 kb on - strand at 1211.771 kb on - strand at 1211.771 kb on - strand at 1211.771 kb on - strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.772 kb on + strand at 1211.773 kb on - strand at 1211.773 kb on - strand at 1211.773 kb on - strand at 1211.773 kb on - strand at 1211.773 kb on - strand at 1211.775 kb on - strand at 1211.905 kb on - strand, within ECD_01148 at 1211.941 kb on + strand, within ECD_01148 at 1211.978 kb on + strand, within ECD_01148 at 1212.001 kb on + strand, within ECD_01148 at 1212.001 kb on + strand, within ECD_01148 at 1212.003 kb on + strand, within ECD_01148 at 1212.003 kb on + strand, within ECD_01148
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,209,866 - +0.7 1,210,932 - ECD_01147 0.37 +0.8 1,211,169 - +0.4 1,211,436 - -0.0 1,211,635 - -1.2 1,211,723 + +0.8 1,211,730 + +1.2 1,211,730 + +0.9 1,211,770 + +0.0 1,211,770 + -1.5 1,211,770 + -1.3 1,211,770 + +0.6 1,211,770 + +0.6 1,211,770 + -2.8 1,211,770 + +0.4 1,211,771 - +0.1 1,211,771 - +0.9 1,211,771 - +0.7 1,211,771 - +1.8 1,211,771 - -2.5 1,211,771 - +1.8 1,211,772 + +1.4 1,211,772 + -0.1 1,211,772 + +0.7 1,211,772 + -0.6 1,211,772 + -1.5 1,211,772 + -0.8 1,211,772 + +0.9 1,211,772 + -0.2 1,211,772 + +0.9 1,211,772 + +0.6 1,211,772 + +0.5 1,211,772 + -0.4 1,211,772 + -1.1 1,211,772 + -2.2 1,211,773 - +0.3 1,211,773 - +0.0 1,211,773 - -0.6 1,211,773 - +0.8 1,211,773 - -0.5 1,211,775 - +0.1 1,211,905 - ECD_01148 0.24 +1.5 1,211,941 + ECD_01148 0.41 -2.2 1,211,978 + ECD_01148 0.58 +0.6 1,212,001 + ECD_01148 0.69 +0.6 1,212,001 + ECD_01148 0.69 +0.4 1,212,003 + ECD_01148 0.70 +1.6 1,212,003 + ECD_01148 0.70 +0.7
Or see this region's nucleotide sequence