Strain Fitness in Escherichia coli BL21 around ECD_00958

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00956 and ECD_00957 are separated by 255 nucleotidesECD_00957 and ECD_00958 are separated by 69 nucleotidesECD_00958 and ECD_00959 are separated by 68 nucleotides ECD_00956: ECD_00956 - DUF330 family putative lipoprotein, at 1,019,985 to 1,020,548 _00956 ECD_00957: ECD_00957 - ribosome modulation factor, at 1,020,804 to 1,020,971 _00957 ECD_00958: ECD_00958 - beta-hydroxydecanoyl thioester dehydrase, at 1,021,041 to 1,021,559 _00958 ECD_00959: ECD_00959 - putative peptidase, at 1,021,628 to 1,023,388 _00959 Position (kb) 1021 1022Strain fitness (log2 ratio) -3 -2 -1 0 1at 1020.174 kb on + strand, within ECD_00956at 1020.195 kb on + strand, within ECD_00956at 1020.734 kb on + strandat 1020.752 kb on + strandat 1021.658 kb on + strandat 1021.709 kb on - strandat 1021.829 kb on + strand, within ECD_00959at 1021.860 kb on - strand, within ECD_00959at 1022.077 kb on + strand, within ECD_00959at 1022.078 kb on - strand, within ECD_00959at 1022.151 kb on - strand, within ECD_00959at 1022.270 kb on - strand, within ECD_00959at 1022.333 kb on - strand, within ECD_00959at 1022.398 kb on + strand, within ECD_00959at 1022.398 kb on + strand, within ECD_00959at 1022.500 kb on + strand, within ECD_00959

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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1,020,174 + ECD_00956 0.34 -0.3
1,020,195 + ECD_00956 0.37 +0.7
1,020,734 + -0.3
1,020,752 + +0.4
1,021,658 + -1.7
1,021,709 - -0.1
1,021,829 + ECD_00959 0.11 -3.6
1,021,860 - ECD_00959 0.13 +1.2
1,022,077 + ECD_00959 0.25 -2.7
1,022,078 - ECD_00959 0.26 -2.4
1,022,151 - ECD_00959 0.30 +0.5
1,022,270 - ECD_00959 0.36 -2.4
1,022,333 - ECD_00959 0.40 -0.6
1,022,398 + ECD_00959 0.44 -0.2
1,022,398 + ECD_00959 0.44 +1.2
1,022,500 + ECD_00959 0.50 -1.4

Or see this region's nucleotide sequence