Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00955 and ECD_00956 overlap by 4 nucleotides ECD_00956 and ECD_00957 are separated by 255 nucleotides ECD_00957 and ECD_00958 are separated by 69 nucleotides ECD_00958 and ECD_00959 are separated by 68 nucleotides
ECD_00955: ECD_00955 - paraquat-inducible, SoxRS-regulated MCE domain protein, at 1,018,348 to 1,019,988
_00955
ECD_00956: ECD_00956 - DUF330 family putative lipoprotein, at 1,019,985 to 1,020,548
_00956
ECD_00957: ECD_00957 - ribosome modulation factor, at 1,020,804 to 1,020,971
_00957
ECD_00958: ECD_00958 - beta-hydroxydecanoyl thioester dehydrase, at 1,021,041 to 1,021,559
_00958
ECD_00959: ECD_00959 - putative peptidase, at 1,021,628 to 1,023,388
_00959
Position (kb) 1020
1021 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1019.840 kb on - strand at 1020.174 kb on + strand, within ECD_00956 at 1020.195 kb on + strand, within ECD_00956 at 1020.734 kb on + strand at 1020.752 kb on + strand at 1021.658 kb on + strand at 1021.709 kb on - strand at 1021.829 kb on + strand, within ECD_00959 at 1021.860 kb on - strand, within ECD_00959
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 1,019,840 - +0.6 1,020,174 + ECD_00956 0.34 -0.3 1,020,195 + ECD_00956 0.37 +0.7 1,020,734 + -0.3 1,020,752 + +0.4 1,021,658 + -1.7 1,021,709 - -0.1 1,021,829 + ECD_00959 0.11 -3.6 1,021,860 - ECD_00959 0.13 +1.2
Or see this region's nucleotide sequence