Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00926 and ECD_00927 overlap by 20 nucleotides ECD_00927 and ECD_00928 overlap by 1 nucleotides ECD_00928 and ECD_00929 are separated by 260 nucleotides
ECD_00926: ECD_00926 - chromosome condensin MukBEF, kleisin-like subunit, binds calcium, at 979,409 to 980,731
_00926
ECD_00927: ECD_00927 - chromosome condensin MukBEF, MukE localization factor, at 980,712 to 981,416
_00927
ECD_00928: ECD_00928 - chromosome condensin MukBEF, ATPase and DNA-binding subunit, at 981,416 to 985,876
_00928
ECD_00929: ECD_00929 - murein L,D-transpeptidase, at 986,137 to 987,984
_00929
Position (kb) 981
982
983
984
985
986 Strain fitness (log2 ratio) -1
0
1
2 at 985.990 kb on - strand at 985.990 kb on - strand at 986.010 kb on - strand at 986.113 kb on + strand at 986.145 kb on + strand at 986.393 kb on - strand, within ECD_00929 at 986.429 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.663 kb on - strand, within ECD_00929 at 986.664 kb on + strand, within ECD_00929
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 985,990 - -0.3 985,990 - +0.8 986,010 - -0.2 986,113 + +0.5 986,145 + +0.3 986,393 - ECD_00929 0.14 +2.0 986,429 - ECD_00929 0.16 +0.5 986,663 - ECD_00929 0.28 -0.9 986,663 - ECD_00929 0.28 +1.5 986,664 + ECD_00929 0.29 -0.8
Or see this region's nucleotide sequence