Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00896 and ECD_00897 are separated by 90 nucleotides ECD_00897 and ECD_00898 are separated by 238 nucleotides
ECD_00896: ECD_00896 - recombination intermediate processing DNA-dependent ATPase, at 943,085 to 944,428
_00896
ECD_00897: ECD_00897 - seryl-tRNA synthetase, at 944,519 to 945,811
_00897
ECD_00898: ECD_00898 - dimethyl sulfoxide reductase, anaerobic, subunit A, at 946,050 to 948,494
_00898
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 943.602 kb on + strand, within ECD_00896 at 943.605 kb on + strand, within ECD_00896 at 943.762 kb on + strand, within ECD_00896 at 943.873 kb on + strand, within ECD_00896 at 943.950 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 943.952 kb on + strand, within ECD_00896 at 944.297 kb on + strand at 945.970 kb on + strand at 945.972 kb on + strand at 945.985 kb on + strand at 946.153 kb on + strand at 946.238 kb on + strand at 946.239 kb on - strand at 946.244 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.271 kb on + strand at 946.272 kb on - strand at 946.300 kb on - strand, within ECD_00898 at 946.463 kb on + strand, within ECD_00898 at 946.463 kb on + strand, within ECD_00898 at 946.535 kb on + strand, within ECD_00898 at 946.693 kb on - strand, within ECD_00898 at 946.810 kb on - strand, within ECD_00898
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 943,602 + ECD_00896 0.38 -2.0 943,605 + ECD_00896 0.39 +0.6 943,762 + ECD_00896 0.50 +1.0 943,873 + ECD_00896 0.59 -0.2 943,950 + ECD_00896 0.64 -0.4 943,952 + ECD_00896 0.65 +0.4 943,952 + ECD_00896 0.65 +1.0 943,952 + ECD_00896 0.65 -3.7 943,952 + ECD_00896 0.65 +0.1 944,297 + -0.1 945,970 + -0.8 945,972 + +0.7 945,985 + -1.2 946,153 + +0.0 946,238 + +0.2 946,239 - -0.1 946,244 + -1.5 946,271 + +0.2 946,271 + -0.8 946,271 + -0.4 946,271 + +0.5 946,272 - +1.6 946,300 - ECD_00898 0.10 +1.9 946,463 + ECD_00898 0.17 -2.3 946,463 + ECD_00898 0.17 -0.8 946,535 + ECD_00898 0.20 +0.3 946,693 - ECD_00898 0.26 -2.7 946,810 - ECD_00898 0.31 -0.6
Or see this region's nucleotide sequence