Strain Fitness in Escherichia coli BL21 around ECD_00829

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00827 and ECD_00828 are separated by 192 nucleotidesECD_00828 and ECD_00829 are separated by 271 nucleotidesECD_00829 and ECD_00830 are separated by 36 nucleotides ECD_00827: ECD_00827 - Prophage protein, at 876,583 to 876,888 _00827 ECD_00828: ECD_00828 - hypothetical protein, at 877,081 to 877,416 _00828 ECD_00829: ECD_00829 - hypothetical protein, at 877,688 to 877,852 _00829 ECD_00830: ECD_00830 - hypothetical protein, at 877,889 to 878,812 _00830 Position (kb) 877 878Strain fitness (log2 ratio) -1 0 1at 876.887 kb on - strandat 876.948 kb on + strandat 877.077 kb on - strandat 877.083 kb on - strandat 877.184 kb on - strand, within ECD_00828at 877.351 kb on - strand, within ECD_00828at 877.501 kb on - strandat 877.555 kb on + strandat 877.760 kb on - strand, within ECD_00829at 878.693 kb on + strand, within ECD_00830at 878.698 kb on + strand, within ECD_00830at 878.779 kb on + strandat 878.779 kb on + strandat 878.828 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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876,887 - +0.3
876,948 + +1.3
877,077 - +0.2
877,083 - +0.2
877,184 - ECD_00828 0.31 +0.5
877,351 - ECD_00828 0.80 +0.2
877,501 - +0.2
877,555 + -1.3
877,760 - ECD_00829 0.44 -0.0
878,693 + ECD_00830 0.87 +1.1
878,698 + ECD_00830 0.88 +0.6
878,779 + -0.7
878,779 + +0.4
878,828 + +0.2

Or see this region's nucleotide sequence