Experiment: Casamino-acids
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ECD_00638 and ECD_00639 are separated by 49 nucleotides ECD_00639 and ECD_00640 are separated by 83 nucleotides ECD_00640 and ECD_00641 are separated by 288 nucleotides
ECD_00638: ECD_00638 - chitoporin, at 668,208 to 669,614
_00638
ECD_00639: ECD_00639 - chitosugar-induced verified lipoprotein, at 669,664 to 669,990
_00639
ECD_00640: ECD_00640 - ferric iron uptake regulon transcriptional repressor; autorepressor, at 670,074 to 670,520
_00640
ECD_00641: ECD_00641 - flavodoxin 1, at 670,809 to 671,339
_00641
Position (kb) 669
670 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 668.719 kb on - strand, within ECD_00638 at 668.782 kb on - strand, within ECD_00638 at 669.188 kb on + strand, within ECD_00638 at 669.295 kb on - strand, within ECD_00638 at 669.342 kb on + strand, within ECD_00638 at 669.363 kb on - strand, within ECD_00638 at 669.450 kb on + strand, within ECD_00638 at 669.708 kb on - strand, within ECD_00639 at 669.979 kb on - strand at 670.076 kb on - strand at 670.293 kb on - strand, within ECD_00640 at 670.673 kb on - strand at 670.720 kb on - strand at 670.745 kb on - strand at 670.783 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino-acids remove 668,719 - ECD_00638 0.36 -0.7 668,782 - ECD_00638 0.41 -0.5 669,188 + ECD_00638 0.70 -1.3 669,295 - ECD_00638 0.77 +0.7 669,342 + ECD_00638 0.81 +0.5 669,363 - ECD_00638 0.82 -2.8 669,450 + ECD_00638 0.88 -0.6 669,708 - ECD_00639 0.13 -0.7 669,979 - -0.3 670,076 - -0.0 670,293 - ECD_00640 0.49 -0.8 670,673 - -0.7 670,720 - +0.2 670,745 - +0.0 670,783 + +0.7
Or see this region's nucleotide sequence