Strain Fitness in Escherichia coli BL21 around ECD_00451

Experiment: Casamino-acids

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntECD_00449 and ECD_00450 overlap by 1 nucleotidesECD_00450 and ECD_00451 overlap by 20 nucleotidesECD_00451 and ECD_00452 are separated by 743 nucleotides ECD_00449: ECD_00449 - putative immunity protein, at 496,727 to 497,095 _00449 ECD_00450: ECD_00450 - conserved protein, rhs-like protein, at 497,095 to 497,805 _00450 ECD_00451: ECD_00451 - hypothetical protein, at 497,786 to 498,046 _00451 ECD_00452: ECD_00452 - putative DNA-binding transcriptional regulator, at 498,790 to 499,161 _00452 Position (kb) 497 498 499Strain fitness (log2 ratio) -1 0 1at 497.143 kb on + strandat 497.243 kb on - strand, within ECD_00450at 497.397 kb on - strand, within ECD_00450at 498.873 kb on + strand, within ECD_00452at 498.969 kb on + strand, within ECD_00452at 498.996 kb on + strand, within ECD_00452at 499.043 kb on + strand, within ECD_00452

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Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
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497,143 + +0.5
497,243 - ECD_00450 0.21 -1.0
497,397 - ECD_00450 0.42 -0.2
498,873 + ECD_00452 0.22 +0.3
498,969 + ECD_00452 0.48 -0.1
498,996 + ECD_00452 0.55 +1.3
499,043 + ECD_00452 0.68 -0.3

Or see this region's nucleotide sequence