Strain Fitness in Escherichia coli BL21 around ECD_00168

Experiment: Casamino-acids

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntECD_00167 and ECD_00168 are separated by 257 nucleotidesECD_00168 and ECD_00169 are separated by 146 nucleotides ECD_00167: ECD_00167 - 30S ribosomal subunit protein S2, at 192,717 to 193,442 _00167 ECD_00168: ECD_00168 - translation elongation factor EF-Ts, at 193,700 to 194,551 _00168 ECD_00169: ECD_00169 - uridylate kinase, at 194,698 to 195,423 _00169 Position (kb) 193 194 195Strain fitness (log2 ratio) -1 0 1at 193.453 kb on + strandat 193.453 kb on + strandat 193.453 kb on + strandat 193.467 kb on + strandat 193.514 kb on + strandat 193.514 kb on + strandat 193.514 kb on + strandat 193.514 kb on + strandat 193.522 kb on + strandat 194.660 kb on + strandat 195.441 kb on + strandat 195.441 kb on + strandat 195.441 kb on + strandat 195.476 kb on + strandat 195.488 kb on + strandat 195.488 kb on + strandat 195.488 kb on + strandat 195.488 kb on + strandat 195.544 kb on + strandat 195.544 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Casamino-acids
remove
193,453 + -0.6
193,453 + +0.3
193,453 + +0.9
193,467 + -1.5
193,514 + -0.6
193,514 + -1.5
193,514 + -0.9
193,514 + -0.7
193,522 + +1.4
194,660 + +0.4
195,441 + -0.6
195,441 + -0.9
195,441 + -0.2
195,476 + -0.1
195,488 + -0.5
195,488 + +0.2
195,488 + -1.0
195,488 + -0.6
195,544 + -0.1
195,544 + -0.2

Or see this region's nucleotide sequence