Experiment: Ferulic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5442 and Atu5443 are separated by 98 nucleotides Atu5443 and Atu5444 are separated by 110 nucleotides Atu5444 and Atu5445 are separated by 57 nucleotides
Atu5442: Atu5442 - methyl-accepting chemotaxis protein, at 434,584 to 436,524
Atu5442
Atu5443: Atu5443 - TetR family transcriptional regulator, at 436,623 to 437,171
Atu5443
Atu5444: Atu5444 - short-chain dehydrogenase, at 437,282 to 438,070
Atu5444
Atu5445: Atu5445 - oxidoreductase, at 438,128 to 439,222
Atu5445
Position (kb) 437
438
439 Strain fitness (log2 ratio) -2
-1
0
1
2 at 436.370 kb on + strand at 436.388 kb on + strand at 436.403 kb on + strand at 436.403 kb on + strand at 436.498 kb on + strand at 436.590 kb on - strand at 436.614 kb on - strand at 436.628 kb on - strand at 436.687 kb on - strand, within Atu5443 at 436.714 kb on + strand, within Atu5443 at 436.762 kb on + strand, within Atu5443 at 436.770 kb on - strand, within Atu5443 at 436.794 kb on - strand, within Atu5443 at 436.809 kb on + strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.824 kb on - strand, within Atu5443 at 436.840 kb on + strand, within Atu5443 at 436.924 kb on - strand, within Atu5443 at 436.955 kb on + strand, within Atu5443 at 437.014 kb on + strand, within Atu5443 at 437.074 kb on + strand, within Atu5443 at 437.091 kb on + strand, within Atu5443 at 437.300 kb on + strand at 437.300 kb on + strand at 437.364 kb on + strand, within Atu5444 at 437.384 kb on + strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.507 kb on - strand, within Atu5444 at 437.511 kb on + strand, within Atu5444 at 437.586 kb on + strand, within Atu5444 at 437.596 kb on + strand, within Atu5444 at 437.614 kb on + strand, within Atu5444 at 437.790 kb on + strand, within Atu5444 at 437.872 kb on + strand, within Atu5444 at 437.915 kb on + strand, within Atu5444 at 438.030 kb on + strand at 438.040 kb on + strand at 438.064 kb on + strand at 438.072 kb on - strand at 438.072 kb on - strand at 438.074 kb on + strand at 438.160 kb on - strand at 438.168 kb on - strand at 438.235 kb on - strand at 438.256 kb on + strand, within Atu5445 at 438.256 kb on + strand, within Atu5445 at 438.256 kb on + strand, within Atu5445 at 438.258 kb on + strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.264 kb on - strand, within Atu5445 at 438.266 kb on - strand, within Atu5445 at 438.266 kb on - strand, within Atu5445 at 438.289 kb on - strand, within Atu5445 at 438.293 kb on + strand, within Atu5445 at 438.320 kb on + strand, within Atu5445 at 438.375 kb on + strand, within Atu5445 at 438.375 kb on + strand, within Atu5445 at 438.383 kb on - strand, within Atu5445 at 438.466 kb on + strand, within Atu5445 at 438.474 kb on - strand, within Atu5445 at 438.666 kb on + strand, within Atu5445 at 438.672 kb on + strand, within Atu5445 at 438.694 kb on - strand, within Atu5445 at 438.704 kb on - strand, within Atu5445 at 438.803 kb on + strand, within Atu5445 at 438.811 kb on - strand, within Atu5445 at 438.811 kb on - strand, within Atu5445 at 438.819 kb on - strand, within Atu5445 at 438.843 kb on - strand, within Atu5445 at 438.848 kb on + strand, within Atu5445 at 438.863 kb on + strand, within Atu5445 at 438.871 kb on - strand, within Atu5445 at 438.895 kb on + strand, within Atu5445 at 438.913 kb on - strand, within Atu5445 at 438.927 kb on - strand, within Atu5445 at 438.958 kb on - strand, within Atu5445 at 439.004 kb on - strand, within Atu5445 at 439.059 kb on - strand, within Atu5445
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) remove 436,370 + +0.1 436,388 + -0.6 436,403 + +1.9 436,403 + +0.7 436,498 + -0.2 436,590 - +0.6 436,614 - -0.2 436,628 - -0.9 436,687 - Atu5443 0.12 +0.3 436,714 + Atu5443 0.17 -0.8 436,762 + Atu5443 0.25 -0.2 436,770 - Atu5443 0.27 +0.6 436,794 - Atu5443 0.31 +0.4 436,809 + Atu5443 0.34 +0.7 436,824 - Atu5443 0.37 +0.1 436,824 - Atu5443 0.37 -0.7 436,840 + Atu5443 0.40 -0.1 436,924 - Atu5443 0.55 -0.2 436,955 + Atu5443 0.60 +0.0 437,014 + Atu5443 0.71 -0.4 437,074 + Atu5443 0.82 -0.7 437,091 + Atu5443 0.85 -0.9 437,300 + +0.0 437,300 + +0.0 437,364 + Atu5444 0.10 -0.6 437,384 + Atu5444 0.13 +0.1 437,507 - Atu5444 0.29 +0.5 437,507 - Atu5444 0.29 +1.4 437,507 - Atu5444 0.29 -0.4 437,511 + Atu5444 0.29 +0.3 437,586 + Atu5444 0.39 +1.2 437,596 + Atu5444 0.40 +0.2 437,614 + Atu5444 0.42 -0.7 437,790 + Atu5444 0.64 +0.3 437,872 + Atu5444 0.75 +0.4 437,915 + Atu5444 0.80 +0.5 438,030 + +0.0 438,040 + +0.2 438,064 + -0.1 438,072 - -1.0 438,072 - -0.3 438,074 + -0.0 438,160 - -0.5 438,168 - +0.3 438,235 - -0.6 438,256 + Atu5445 0.12 -0.5 438,256 + Atu5445 0.12 +1.1 438,256 + Atu5445 0.12 +0.8 438,258 + Atu5445 0.12 -0.7 438,264 - Atu5445 0.12 +0.2 438,264 - Atu5445 0.12 +0.0 438,264 - Atu5445 0.12 -0.0 438,264 - Atu5445 0.12 +0.0 438,266 - Atu5445 0.13 -2.2 438,266 - Atu5445 0.13 -0.3 438,289 - Atu5445 0.15 +0.0 438,293 + Atu5445 0.15 +0.0 438,320 + Atu5445 0.18 -0.3 438,375 + Atu5445 0.23 +0.5 438,375 + Atu5445 0.23 +0.4 438,383 - Atu5445 0.23 +1.0 438,466 + Atu5445 0.31 +1.4 438,474 - Atu5445 0.32 +1.4 438,666 + Atu5445 0.49 +0.0 438,672 + Atu5445 0.50 -0.5 438,694 - Atu5445 0.52 +0.2 438,704 - Atu5445 0.53 +0.6 438,803 + Atu5445 0.62 +0.3 438,811 - Atu5445 0.62 -1.4 438,811 - Atu5445 0.62 +0.3 438,819 - Atu5445 0.63 +0.4 438,843 - Atu5445 0.65 +0.1 438,848 + Atu5445 0.66 +0.0 438,863 + Atu5445 0.67 -0.1 438,871 - Atu5445 0.68 -0.1 438,895 + Atu5445 0.70 +0.1 438,913 - Atu5445 0.72 -0.3 438,927 - Atu5445 0.73 +0.4 438,958 - Atu5445 0.76 -0.1 439,004 - Atu5445 0.80 +1.0 439,059 - Atu5445 0.85 +0.0
Or see this region's nucleotide sequence