Experiment: Ferulic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0671 and Atu0672 are separated by 207 nucleotides Atu0672 and Atu0673 are separated by 25 nucleotides Atu0673 and Atu0674 are separated by 6 nucleotides
Atu0671: Atu0671 - hypothetical protein, at 667,418 to 668,335
Atu0671
Atu0672: Atu0672 - transcriptional regulator, LysR family, at 668,543 to 669,460
Atu0672
Atu0673: Atu0673 - hypothetical protein, at 669,486 to 670,250
Atu0673
Atu0674: Atu0674 - hypothetical protein, at 670,257 to 670,526
Atu0674
Position (kb) 668
669
670 Strain fitness (log2 ratio) -2
-1
0
1 at 667.578 kb on - strand, within Atu0671 at 667.789 kb on - strand, within Atu0671 at 667.797 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 667.876 kb on + strand, within Atu0671 at 668.151 kb on + strand, within Atu0671 at 668.167 kb on + strand, within Atu0671 at 668.168 kb on + strand, within Atu0671 at 668.244 kb on + strand at 668.404 kb on + strand at 668.445 kb on + strand at 668.457 kb on + strand at 668.494 kb on - strand at 668.547 kb on + strand at 668.599 kb on - strand at 668.599 kb on - strand at 668.834 kb on + strand, within Atu0672 at 668.834 kb on + strand, within Atu0672 at 668.842 kb on - strand, within Atu0672 at 668.868 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.948 kb on + strand, within Atu0672 at 668.953 kb on + strand, within Atu0672 at 668.956 kb on - strand, within Atu0672 at 668.975 kb on - strand, within Atu0672 at 669.002 kb on + strand, within Atu0672 at 669.011 kb on + strand, within Atu0672 at 669.033 kb on + strand, within Atu0672 at 669.059 kb on - strand, within Atu0672 at 669.083 kb on - strand, within Atu0672 at 669.112 kb on + strand, within Atu0672 at 669.119 kb on - strand, within Atu0672 at 669.122 kb on - strand, within Atu0672 at 669.133 kb on + strand, within Atu0672 at 669.133 kb on + strand, within Atu0672 at 669.382 kb on - strand at 669.475 kb on - strand at 669.628 kb on + strand, within Atu0673 at 669.628 kb on + strand, within Atu0673 at 669.655 kb on - strand, within Atu0673 at 669.693 kb on + strand, within Atu0673 at 669.762 kb on - strand, within Atu0673 at 669.784 kb on - strand, within Atu0673 at 670.003 kb on + strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.038 kb on - strand, within Atu0673 at 670.058 kb on - strand, within Atu0673 at 670.134 kb on + strand, within Atu0673 at 670.159 kb on + strand, within Atu0673 at 670.245 kb on - strand at 670.245 kb on - strand at 670.245 kb on - strand at 670.285 kb on + strand, within Atu0674 at 670.285 kb on + strand, within Atu0674 at 670.319 kb on + strand, within Atu0674 at 670.383 kb on + strand, within Atu0674
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) remove 667,578 - Atu0671 0.17 -0.5 667,789 - Atu0671 0.40 -0.1 667,797 + Atu0671 0.41 +0.2 667,876 + Atu0671 0.50 +0.1 667,876 + Atu0671 0.50 -0.7 667,876 + Atu0671 0.50 -0.9 668,151 + Atu0671 0.80 +0.3 668,167 + Atu0671 0.82 +0.4 668,168 + Atu0671 0.82 -0.3 668,244 + +0.1 668,404 + -0.2 668,445 + +0.0 668,457 + +1.1 668,494 - +0.0 668,547 + -0.3 668,599 - +0.0 668,599 - -0.6 668,834 + Atu0672 0.32 +1.0 668,834 + Atu0672 0.32 +1.3 668,842 - Atu0672 0.33 +1.6 668,868 + Atu0672 0.35 +0.4 668,948 + Atu0672 0.44 +0.0 668,948 + Atu0672 0.44 +1.3 668,953 + Atu0672 0.45 +0.2 668,956 - Atu0672 0.45 -0.5 668,975 - Atu0672 0.47 -0.1 669,002 + Atu0672 0.50 +1.1 669,011 + Atu0672 0.51 +1.0 669,033 + Atu0672 0.53 +0.2 669,059 - Atu0672 0.56 +0.0 669,083 - Atu0672 0.59 +0.4 669,112 + Atu0672 0.62 +0.0 669,119 - Atu0672 0.63 +0.8 669,122 - Atu0672 0.63 -0.7 669,133 + Atu0672 0.64 -0.4 669,133 + Atu0672 0.64 +1.2 669,382 - -0.6 669,475 - -0.2 669,628 + Atu0673 0.19 -0.2 669,628 + Atu0673 0.19 -0.1 669,655 - Atu0673 0.22 -0.1 669,693 + Atu0673 0.27 -0.3 669,762 - Atu0673 0.36 +0.9 669,784 - Atu0673 0.39 -0.0 670,003 + Atu0673 0.68 -2.0 670,038 - Atu0673 0.72 +1.0 670,038 - Atu0673 0.72 -0.6 670,058 - Atu0673 0.75 +0.4 670,134 + Atu0673 0.85 -0.8 670,159 + Atu0673 0.88 +0.0 670,245 - +0.1 670,245 - -0.6 670,245 - +0.1 670,285 + Atu0674 0.10 -0.4 670,285 + Atu0674 0.10 +1.0 670,319 + Atu0674 0.23 -0.3 670,383 + Atu0674 0.47 -0.3
Or see this region's nucleotide sequence