Experiment: Ferulic Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0581 and Atu0582 are separated by 29 nucleotides Atu0582 and Atu0583 are separated by 15 nucleotides Atu0583 and Atu0584 are separated by 142 nucleotides Atu0584 and Atu0585 are separated by 29 nucleotides
Atu0581: Atu0581 - flagellar biosynthesis protein, at 564,582 to 566,669
Atu0581
Atu0582: Atu0582 - flagellar biosynthetic protein FLIR, at 566,699 to 567,421
Atu0582
Atu0583: Atu0583 - hypothetical protein, at 567,437 to 567,856
Atu0583
Atu0584: Atu0584 - hypothetical protein, at 567,999 to 568,526
Atu0584
Atu0585: Atu0585 - hypothetical protein, at 568,556 to 568,924
Atu0585
Position (kb) 567
568 Strain fitness (log2 ratio) -1
0
1
2 at 566.441 kb on + strand, within Atu0581 at 566.467 kb on + strand at 566.538 kb on - strand at 566.563 kb on + strand at 566.627 kb on + strand at 566.627 kb on + strand at 566.635 kb on - strand at 566.642 kb on - strand at 566.721 kb on - strand at 566.772 kb on - strand, within Atu0582 at 566.801 kb on - strand, within Atu0582 at 566.821 kb on - strand, within Atu0582 at 566.825 kb on - strand, within Atu0582 at 566.830 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.849 kb on - strand, within Atu0582 at 566.915 kb on - strand, within Atu0582 at 566.959 kb on - strand, within Atu0582 at 566.968 kb on + strand, within Atu0582 at 566.971 kb on - strand, within Atu0582 at 567.079 kb on - strand, within Atu0582 at 567.101 kb on + strand, within Atu0582 at 567.189 kb on - strand, within Atu0582 at 567.264 kb on + strand, within Atu0582 at 567.296 kb on + strand, within Atu0582 at 567.383 kb on + strand at 567.443 kb on - strand at 567.463 kb on + strand at 567.471 kb on - strand at 567.518 kb on - strand, within Atu0583 at 567.585 kb on + strand, within Atu0583 at 567.588 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.627 kb on - strand, within Atu0583 at 567.627 kb on - strand, within Atu0583 at 567.672 kb on - strand, within Atu0583 at 567.830 kb on + strand at 567.981 kb on + strand at 568.096 kb on + strand, within Atu0584 at 568.107 kb on + strand, within Atu0584 at 568.114 kb on - strand, within Atu0584 at 568.130 kb on - strand, within Atu0584 at 568.138 kb on - strand, within Atu0584 at 568.151 kb on + strand, within Atu0584 at 568.152 kb on - strand, within Atu0584 at 568.164 kb on - strand, within Atu0584 at 568.195 kb on - strand, within Atu0584 at 568.227 kb on + strand, within Atu0584 at 568.286 kb on + strand, within Atu0584 at 568.294 kb on - strand, within Atu0584 at 568.310 kb on - strand, within Atu0584 at 568.310 kb on - strand, within Atu0584 at 568.313 kb on + strand, within Atu0584 at 568.366 kb on + strand, within Atu0584 at 568.384 kb on - strand, within Atu0584 at 568.406 kb on + strand, within Atu0584 at 568.592 kb on + strand at 568.667 kb on - strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.762 kb on + strand, within Atu0585 at 568.814 kb on + strand, within Atu0585
Per-strain Table
Position Strand Gene LocusTag Fraction Ferulic Acid (C) remove 566,441 + Atu0581 0.89 +0.1 566,467 + +0.4 566,538 - +0.1 566,563 + -0.3 566,627 + -0.0 566,627 + +0.3 566,635 - +0.1 566,642 - -0.1 566,721 - -0.0 566,772 - Atu0582 0.10 +0.0 566,801 - Atu0582 0.14 -0.4 566,821 - Atu0582 0.17 +0.2 566,825 - Atu0582 0.17 -0.2 566,830 + Atu0582 0.18 +0.2 566,841 + Atu0582 0.20 +0.3 566,841 + Atu0582 0.20 -0.1 566,841 + Atu0582 0.20 +0.0 566,849 - Atu0582 0.21 -0.1 566,915 - Atu0582 0.30 +0.2 566,959 - Atu0582 0.36 -0.0 566,968 + Atu0582 0.37 -0.0 566,971 - Atu0582 0.38 +0.5 567,079 - Atu0582 0.53 +0.1 567,101 + Atu0582 0.56 +0.5 567,189 - Atu0582 0.68 -0.3 567,264 + Atu0582 0.78 +0.6 567,296 + Atu0582 0.83 -0.1 567,383 + +0.2 567,443 - -0.5 567,463 + -0.5 567,471 - +0.8 567,518 - Atu0583 0.19 +0.8 567,585 + Atu0583 0.35 +0.0 567,588 + Atu0583 0.36 -0.0 567,619 + Atu0583 0.43 +0.5 567,619 + Atu0583 0.43 +0.3 567,627 - Atu0583 0.45 +0.3 567,627 - Atu0583 0.45 +0.6 567,672 - Atu0583 0.56 -0.1 567,830 + +0.7 567,981 + +0.4 568,096 + Atu0584 0.18 +0.2 568,107 + Atu0584 0.20 +0.2 568,114 - Atu0584 0.22 +0.5 568,130 - Atu0584 0.25 -0.6 568,138 - Atu0584 0.26 -0.2 568,151 + Atu0584 0.29 -0.1 568,152 - Atu0584 0.29 -0.3 568,164 - Atu0584 0.31 +0.5 568,195 - Atu0584 0.37 +0.3 568,227 + Atu0584 0.43 +0.2 568,286 + Atu0584 0.54 -0.9 568,294 - Atu0584 0.56 +1.8 568,310 - Atu0584 0.59 -0.8 568,310 - Atu0584 0.59 +0.6 568,313 + Atu0584 0.59 -0.1 568,366 + Atu0584 0.70 -0.1 568,384 - Atu0584 0.73 +0.6 568,406 + Atu0584 0.77 +0.3 568,592 + +0.3 568,667 - Atu0585 0.30 -1.5 568,762 + Atu0585 0.56 -0.2 568,762 + Atu0585 0.56 -1.0 568,814 + Atu0585 0.70 +0.6
Or see this region's nucleotide sequence