Experiment: 3-aminobenzoate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0457 and Atu0458 overlap by 4 nucleotides Atu0458 and Atu8128 are separated by 33 nucleotides Atu8128 and Atu0460 are separated by 4 nucleotides Atu0460 and Atu0461 are separated by 2 nucleotides
Atu0457: Atu0457 - hypothetical protein, at 452,511 to 454,250
Atu0457
Atu0458: Atu0458 - hypothetical protein, at 454,247 to 454,615
Atu0458
Atu8128: Atu8128 - putative bacteriophage P2 tail protein, at 454,649 to 455,113
Atu8128
Atu0460: Atu0460 - hypothetical protein, at 455,118 to 455,330
Atu0460
Atu0461: Atu0461 - hypothetical protein, at 455,333 to 456,493
Atu0461
Position (kb) 454
455
456 Strain fitness (log2 ratio) -2
-1
0
1 at 453.811 kb on + strand, within Atu0457 at 454.049 kb on - strand, within Atu0457 at 454.087 kb on - strand at 454.128 kb on - strand at 454.234 kb on - strand at 454.241 kb on - strand at 454.251 kb on + strand at 454.277 kb on + strand at 454.277 kb on - strand at 454.296 kb on - strand, within Atu0458 at 454.296 kb on - strand, within Atu0458 at 454.297 kb on + strand, within Atu0458 at 454.315 kb on - strand, within Atu0458 at 454.406 kb on - strand, within Atu0458 at 454.412 kb on - strand, within Atu0458 at 454.481 kb on - strand, within Atu0458 at 454.534 kb on - strand, within Atu0458 at 454.609 kb on + strand at 454.609 kb on + strand at 454.654 kb on - strand at 454.654 kb on - strand at 454.662 kb on + strand at 454.702 kb on - strand, within Atu8128 at 454.726 kb on - strand, within Atu8128 at 454.737 kb on + strand, within Atu8128 at 454.748 kb on + strand, within Atu8128 at 454.775 kb on - strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.780 kb on + strand, within Atu8128 at 454.814 kb on + strand, within Atu8128 at 454.856 kb on - strand, within Atu8128 at 454.866 kb on - strand, within Atu8128 at 454.875 kb on - strand, within Atu8128 at 454.927 kb on + strand, within Atu8128 at 454.953 kb on - strand, within Atu8128 at 454.995 kb on + strand, within Atu8128 at 455.001 kb on - strand, within Atu8128 at 455.016 kb on + strand, within Atu8128 at 455.085 kb on + strand at 455.137 kb on - strand at 455.139 kb on + strand at 455.144 kb on + strand, within Atu0460 at 455.147 kb on - strand, within Atu0460 at 455.152 kb on + strand, within Atu0460 at 455.205 kb on + strand, within Atu0460 at 455.237 kb on + strand, within Atu0460 at 455.242 kb on + strand, within Atu0460 at 455.260 kb on + strand, within Atu0460 at 455.286 kb on + strand, within Atu0460 at 455.329 kb on + strand at 455.411 kb on - strand at 455.417 kb on + strand at 455.484 kb on - strand, within Atu0461 at 455.535 kb on + strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.623 kb on - strand, within Atu0461 at 455.624 kb on - strand, within Atu0461 at 455.631 kb on + strand, within Atu0461 at 455.690 kb on - strand, within Atu0461 at 455.723 kb on - strand, within Atu0461 at 455.757 kb on - strand, within Atu0461 at 455.871 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.013 kb on + strand, within Atu0461 at 456.030 kb on - strand, within Atu0461 at 456.069 kb on - strand, within Atu0461 at 456.113 kb on + strand, within Atu0461
Per-strain Table
Position Strand Gene LocusTag Fraction 3-aminobenzoate (C) remove 453,811 + Atu0457 0.75 +0.7 454,049 - Atu0457 0.88 -0.2 454,087 - -0.1 454,128 - +0.3 454,234 - +0.4 454,241 - -0.0 454,251 + +0.3 454,277 + -0.3 454,277 - -0.0 454,296 - Atu0458 0.13 +0.1 454,296 - Atu0458 0.13 +0.5 454,297 + Atu0458 0.14 -0.2 454,315 - Atu0458 0.18 -0.2 454,406 - Atu0458 0.43 +0.1 454,412 - Atu0458 0.45 +0.0 454,481 - Atu0458 0.63 -0.1 454,534 - Atu0458 0.78 -0.5 454,609 + +0.6 454,609 + -0.2 454,654 - -0.2 454,654 - +0.6 454,662 + -0.3 454,702 - Atu8128 0.11 -0.1 454,726 - Atu8128 0.17 +0.9 454,737 + Atu8128 0.19 +1.4 454,748 + Atu8128 0.21 -0.1 454,775 - Atu8128 0.27 -0.6 454,780 + Atu8128 0.28 +0.2 454,780 + Atu8128 0.28 +1.4 454,814 + Atu8128 0.35 -1.2 454,856 - Atu8128 0.45 +0.0 454,866 - Atu8128 0.47 -0.1 454,875 - Atu8128 0.49 +0.1 454,927 + Atu8128 0.60 +1.4 454,953 - Atu8128 0.65 +0.9 454,995 + Atu8128 0.74 +0.3 455,001 - Atu8128 0.76 +0.7 455,016 + Atu8128 0.79 -0.0 455,085 + +0.3 455,137 - +0.0 455,139 + -0.3 455,144 + Atu0460 0.12 -0.1 455,147 - Atu0460 0.14 -0.4 455,152 + Atu0460 0.16 -0.1 455,205 + Atu0460 0.41 -0.2 455,237 + Atu0460 0.56 -0.7 455,242 + Atu0460 0.58 -0.1 455,260 + Atu0460 0.67 +0.2 455,286 + Atu0460 0.79 -0.3 455,329 + +0.5 455,411 - -1.3 455,417 + -0.1 455,484 - Atu0461 0.13 -0.1 455,535 + Atu0461 0.17 +0.4 455,623 - Atu0461 0.25 -0.6 455,623 - Atu0461 0.25 -2.2 455,624 - Atu0461 0.25 +1.0 455,631 + Atu0461 0.26 +0.4 455,690 - Atu0461 0.31 -0.8 455,723 - Atu0461 0.34 +0.1 455,757 - Atu0461 0.37 +0.7 455,871 + Atu0461 0.46 +0.1 456,013 + Atu0461 0.59 -0.4 456,013 + Atu0461 0.59 -0.1 456,030 - Atu0461 0.60 +0.4 456,069 - Atu0461 0.63 -0.8 456,113 + Atu0461 0.67 +0.3
Or see this region's nucleotide sequence