Strain Fitness in Agrobacterium fabrum C58 around Atu2258

Experiment: 3-aminobenzoate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu2257 and Atu2258 are separated by 89 nucleotidesAtu2258 and Atu2259 are separated by 9 nucleotides Atu2257: Atu2257 - hypothetical protein, at 2,229,065 to 2,231,149 Atu2257 Atu2258: Atu2258 - acetyltransferase, at 2,231,239 to 2,231,652 Atu2258 Atu2259: Atu2259 - MFS permease, at 2,231,662 to 2,232,975 Atu2259 Position (kb) 2231 2232Strain fitness (log2 ratio) -1 0 1at 2231.235 kb on - strandat 2231.407 kb on - strand, within Atu2258at 2231.481 kb on + strand, within Atu2258at 2231.589 kb on + strand, within Atu2258at 2231.615 kb on - strandat 2231.668 kb on - strandat 2231.782 kb on - strandat 2231.900 kb on + strand, within Atu2259at 2231.976 kb on + strand, within Atu2259at 2232.337 kb on - strand, within Atu2259

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Per-strain Table

Position Strand Gene LocusTag Fraction 3-aminobenzoate (C)
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2,231,235 - +0.1
2,231,407 - Atu2258 0.41 -0.2
2,231,481 + Atu2258 0.58 +0.6
2,231,589 + Atu2258 0.85 +0.9
2,231,615 - +0.4
2,231,668 - +0.5
2,231,782 - -0.3
2,231,900 + Atu2259 0.18 +0.1
2,231,976 + Atu2259 0.24 +0.2
2,232,337 - Atu2259 0.51 +0.3

Or see this region's nucleotide sequence