Strain Fitness in Escherichia coli BW25113 around b4651

Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyibJ and yibG are separated by 11 nucleotidesyibG and yibS are separated by 0 nucleotidesyibS and yibW are separated by 1 nucleotidesyibW and yibV are separated by 369 nucleotidesyibV and yibU are separated by 164 nucleotides b3595: yibJ - predicted Rhs-family protein (RefSeq), at 3,765,244 to 3,766,188 yibJ b3596: yibG - hypothetical protein (NCBI), at 3,766,200 to 3,766,661 yibG b4650: yibS - no description, at 3,766,662 to 3,766,913 yibS b4651: yibW - no description, at 3,766,915 to 3,766,998 yibW b4615: yibV - hypothetical protein, no homologs (RefSeq), at 3,767,368 to 3,767,806 yibV b4652: yibU - no description, at 3,767,971 to 3,768,169 yibU Position (kb) 3766 3767Strain fitness (log2 ratio) -1 0 1 2 3at 3765.985 kb on - strand, within yibJat 3765.994 kb on - strand, within yibJat 3765.994 kb on - strand, within yibJat 3765.994 kb on - strand, within yibJat 3765.996 kb on - strand, within yibJat 3766.001 kb on - strand, within yibJat 3766.005 kb on - strand, within yibJat 3766.117 kb on + strandat 3766.691 kb on + strand, within yibSat 3766.713 kb on - strand, within yibSat 3766.715 kb on + strand, within yibSat 3766.715 kb on + strand, within yibSat 3766.718 kb on + strand, within yibSat 3766.754 kb on - strand, within yibSat 3766.757 kb on + strand, within yibSat 3766.773 kb on - strand, within yibSat 3766.780 kb on + strand, within yibSat 3766.780 kb on + strand, within yibSat 3766.840 kb on + strand, within yibSat 3766.840 kb on + strand, within yibSat 3766.840 kb on + strand, within yibSat 3766.840 kb on + strand, within yibSat 3766.841 kb on + strand, within yibSat 3766.856 kb on + strand, within yibSat 3766.858 kb on + strand, within yibSat 3766.858 kb on + strand, within yibSat 3766.858 kb on + strand, within yibSat 3766.859 kb on + strand, within yibSat 3766.878 kb on + strand, within yibSat 3766.878 kb on + strand, within yibSat 3766.892 kb on + strandat 3766.900 kb on + strandat 3766.903 kb on + strandat 3766.903 kb on + strandat 3766.932 kb on + strand, within yibWat 3766.935 kb on + strand, within yibWat 3767.931 kb on - strandat 3767.931 kb on - strandat 3767.938 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Norfloxacin 0.00000015625 mM
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3,765,985 - yibJ b3595 0.78 +2.1
3,765,994 - yibJ b3595 0.79 +2.1
3,765,994 - yibJ b3595 0.79 +2.1
3,765,994 - yibJ b3595 0.79 +2.1
3,765,996 - yibJ b3595 0.80 +2.1
3,766,001 - yibJ b3595 0.80 +2.1
3,766,005 - yibJ b3595 0.81 +2.1
3,766,117 + +2.1
3,766,691 + yibS b4650 0.12 +2.1
3,766,713 - yibS b4650 0.20 +2.1
3,766,715 + yibS b4650 0.21 +2.1
3,766,715 + yibS b4650 0.21 +2.1
3,766,718 + yibS b4650 0.22 +2.1
3,766,754 - yibS b4650 0.37 +0.1
3,766,757 + yibS b4650 0.38 +2.1
3,766,773 - yibS b4650 0.44 +2.1
3,766,780 + yibS b4650 0.47 +2.1
3,766,780 + yibS b4650 0.47 +2.1
3,766,840 + yibS b4650 0.71 -0.5
3,766,840 + yibS b4650 0.71 +2.1
3,766,840 + yibS b4650 0.71 -0.2
3,766,840 + yibS b4650 0.71 +0.5
3,766,841 + yibS b4650 0.71 -0.5
3,766,856 + yibS b4650 0.77 +3.1
3,766,858 + yibS b4650 0.78 +0.5
3,766,858 + yibS b4650 0.78 +2.1
3,766,858 + yibS b4650 0.78 +1.1
3,766,859 + yibS b4650 0.78 +0.5
3,766,878 + yibS b4650 0.86 +2.1
3,766,878 + yibS b4650 0.86 +2.1
3,766,892 + +2.1
3,766,900 + -0.7
3,766,903 + +1.1
3,766,903 + +0.5
3,766,932 + yibW b4651 0.20 +3.1
3,766,935 + yibW b4651 0.24 +2.1
3,767,931 - +2.1
3,767,931 - +1.1
3,767,938 - +1.4

Or see this region's nucleotide sequence