Strain Fitness in Escherichia coli BW25113 around b0904

Experiment: LB Anaerobic with Norfloxacin 0.00000015625 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpflB and focA are separated by 54 nucleotidesfocA and ycaO are separated by 405 nucleotides b0903: pflB - pyruvate formate lyase I (NCBI), at 950,495 to 952,777 pflB b0904: focA - formate transporter (NCBI), at 952,832 to 953,689 focA b0905: ycaO - orf, hypothetical protein (VIMSS), at 954,095 to 955,855 ycaO Position (kb) 952 953 954Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 951.905 kb on - strand, within pflBat 951.961 kb on - strand, within pflBat 951.963 kb on - strand, within pflBat 951.963 kb on - strand, within pflBat 952.102 kb on - strand, within pflBat 952.107 kb on - strand, within pflBat 952.107 kb on - strand, within pflBat 952.132 kb on + strand, within pflBat 952.170 kb on + strand, within pflBat 952.170 kb on + strand, within pflBat 952.178 kb on - strand, within pflBat 952.178 kb on - strand, within pflBat 952.183 kb on - strand, within pflBat 952.256 kb on + strand, within pflBat 952.256 kb on + strand, within pflBat 952.352 kb on + strand, within pflBat 952.405 kb on - strand, within pflBat 952.444 kb on + strand, within pflBat 952.508 kb on + strand, within pflBat 952.521 kb on - strand, within pflBat 952.527 kb on - strand, within pflBat 952.776 kb on + strandat 952.983 kb on - strand, within focAat 952.983 kb on - strand, within focAat 953.066 kb on - strand, within focAat 953.096 kb on + strand, within focAat 953.155 kb on - strand, within focAat 953.163 kb on - strand, within focAat 953.175 kb on + strand, within focAat 953.175 kb on + strand, within focAat 953.193 kb on + strand, within focAat 953.246 kb on + strand, within focAat 953.423 kb on - strand, within focAat 953.423 kb on - strand, within focAat 953.514 kb on + strand, within focAat 953.516 kb on - strand, within focAat 953.516 kb on - strand, within focAat 953.557 kb on + strand, within focAat 953.566 kb on - strand, within focAat 953.581 kb on + strand, within focAat 953.610 kb on + strandat 953.611 kb on + strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.618 kb on - strandat 953.659 kb on + strandat 953.682 kb on + strandat 953.682 kb on + strandat 953.691 kb on - strandat 953.697 kb on - strandat 953.774 kb on + strandat 953.774 kb on + strandat 953.774 kb on + strandat 953.892 kb on + strandat 953.916 kb on + strandat 953.972 kb on + strandat 954.045 kb on + strandat 954.064 kb on - strandat 954.068 kb on + strandat 954.072 kb on + strandat 954.073 kb on + strandat 954.073 kb on + strandat 954.076 kb on - strandat 954.076 kb on - strandat 954.076 kb on - strandat 954.076 kb on - strandat 954.076 kb on - strandat 954.081 kb on - strandat 954.081 kb on - strandat 954.085 kb on - strandat 954.124 kb on + strandat 954.138 kb on - strandat 954.147 kb on + strandat 954.147 kb on + strandat 954.158 kb on + strandat 954.172 kb on + strandat 954.172 kb on + strandat 954.188 kb on + strandat 954.188 kb on + strandat 954.240 kb on + strandat 954.240 kb on + strandat 954.258 kb on + strandat 954.260 kb on + strandat 954.260 kb on + strandat 954.263 kb on - strandat 954.318 kb on + strand, within ycaOat 954.363 kb on + strand, within ycaOat 954.394 kb on - strand, within ycaOat 954.394 kb on - strand, within ycaOat 954.402 kb on + strand, within ycaOat 954.402 kb on + strand, within ycaOat 954.402 kb on + strand, within ycaOat 954.410 kb on - strand, within ycaOat 954.418 kb on + strand, within ycaOat 954.426 kb on - strand, within ycaOat 954.426 kb on - strand, within ycaOat 954.458 kb on - strand, within ycaOat 954.483 kb on + strand, within ycaOat 954.491 kb on - strand, within ycaOat 954.637 kb on + strand, within ycaO

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Per-strain Table

Position Strand Gene LocusTag Fraction LB Anaerobic with Norfloxacin 0.00000015625 mM
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951,905 - pflB b0903 0.62 -0.6
951,961 - pflB b0903 0.64 +0.8
951,963 - pflB b0903 0.64 -0.4
951,963 - pflB b0903 0.64 -0.4
952,102 - pflB b0903 0.70 -0.1
952,107 - pflB b0903 0.71 +0.8
952,107 - pflB b0903 0.71 -0.3
952,132 + pflB b0903 0.72 +0.6
952,170 + pflB b0903 0.73 +0.7
952,170 + pflB b0903 0.73 +0.4
952,178 - pflB b0903 0.74 -0.7
952,178 - pflB b0903 0.74 -0.6
952,183 - pflB b0903 0.74 -1.0
952,256 + pflB b0903 0.77 +0.3
952,256 + pflB b0903 0.77 -0.9
952,352 + pflB b0903 0.81 +0.0
952,405 - pflB b0903 0.84 +0.7
952,444 + pflB b0903 0.85 +1.1
952,508 + pflB b0903 0.88 -0.8
952,521 - pflB b0903 0.89 -2.1
952,527 - pflB b0903 0.89 +0.0
952,776 + -0.1
952,983 - focA b0904 0.18 +0.0
952,983 - focA b0904 0.18 -1.6
953,066 - focA b0904 0.27 +0.3
953,096 + focA b0904 0.31 +0.8
953,155 - focA b0904 0.38 -0.4
953,163 - focA b0904 0.39 -0.7
953,175 + focA b0904 0.40 +0.4
953,175 + focA b0904 0.40 -1.2
953,193 + focA b0904 0.42 +2.1
953,246 + focA b0904 0.48 +0.0
953,423 - focA b0904 0.69 +0.3
953,423 - focA b0904 0.69 +1.5
953,514 + focA b0904 0.79 -0.1
953,516 - focA b0904 0.80 +0.5
953,516 - focA b0904 0.80 -0.4
953,557 + focA b0904 0.84 +1.1
953,566 - focA b0904 0.86 +3.9
953,581 + focA b0904 0.87 +0.5
953,610 + +0.1
953,611 + -0.5
953,618 - -1.1
953,618 - -0.2
953,618 - -2.0
953,618 - -0.6
953,618 - +0.9
953,618 - +1.1
953,618 - +0.1
953,618 - +1.9
953,618 - +0.7
953,659 + -1.0
953,682 + +0.1
953,682 + +0.3
953,691 - +1.7
953,697 - +0.1
953,774 + +0.4
953,774 + +0.5
953,774 + +0.0
953,892 + -0.5
953,916 + -0.0
953,972 + -0.3
954,045 + +0.7
954,064 - +0.1
954,068 + +0.7
954,072 + +1.7
954,073 + +0.7
954,073 + +1.7
954,076 - -0.9
954,076 - -0.6
954,076 - +0.1
954,076 - +1.0
954,076 - -0.5
954,081 - +0.1
954,081 - +1.1
954,085 - +0.5
954,124 + +0.2
954,138 - -1.9
954,147 + +0.1
954,147 + +0.7
954,158 + +0.3
954,172 + +1.1
954,172 + -0.1
954,188 + +1.6
954,188 + +1.7
954,240 + -0.4
954,240 + -0.6
954,258 + +0.2
954,260 + +0.6
954,260 + -1.3
954,263 - -1.2
954,318 + ycaO b0905 0.13 +0.7
954,363 + ycaO b0905 0.15 +1.7
954,394 - ycaO b0905 0.17 +0.3
954,394 - ycaO b0905 0.17 +0.4
954,402 + ycaO b0905 0.17 -0.3
954,402 + ycaO b0905 0.17 +0.1
954,402 + ycaO b0905 0.17 -0.9
954,410 - ycaO b0905 0.18 -0.8
954,418 + ycaO b0905 0.18 +0.1
954,426 - ycaO b0905 0.19 -0.9
954,426 - ycaO b0905 0.19 -0.2
954,458 - ycaO b0905 0.21 +0.2
954,483 + ycaO b0905 0.22 +0.1
954,491 - ycaO b0905 0.22 -1.1
954,637 + ycaO b0905 0.31 -0.3

Or see this region's nucleotide sequence