Strain Fitness in Agrobacterium fabrum C58 around Atu3816

Experiment: anthranilamide (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3814 and Atu3815 are separated by 29 nucleotidesAtu3815 and Atu3816 are separated by 282 nucleotidesAtu3816 and Atu3817 are separated by 298 nucleotides Atu3814: Atu3814 - hypothetical protein, at 910,028 to 910,357 Atu3814 Atu3815: Atu3815 - GntR family transcriptional regulator, at 910,387 to 911,046 Atu3815 Atu3816: Atu3816 - D-threo-aldose 1-dehydrogenase, at 911,329 to 912,375 Atu3816 Atu3817: Atu3817 - dehydratase, at 912,674 to 914,185 Atu3817 Position (kb) 911 912 913Strain fitness (log2 ratio) -2 -1 0 1 2at 910.360 kb on - strandat 910.451 kb on + strandat 910.492 kb on - strand, within Atu3815at 910.493 kb on - strand, within Atu3815at 910.493 kb on - strand, within Atu3815at 910.500 kb on + strand, within Atu3815at 910.528 kb on - strand, within Atu3815at 910.564 kb on - strand, within Atu3815at 910.606 kb on + strand, within Atu3815at 910.607 kb on - strand, within Atu3815at 910.634 kb on + strand, within Atu3815at 910.749 kb on - strand, within Atu3815at 910.832 kb on + strand, within Atu3815at 910.849 kb on + strand, within Atu3815at 910.867 kb on - strand, within Atu3815at 911.001 kb on + strandat 911.026 kb on - strandat 911.046 kb on - strandat 911.105 kb on + strandat 911.144 kb on - strandat 911.146 kb on - strandat 911.254 kb on + strandat 911.283 kb on + strandat 911.324 kb on - strandat 911.510 kb on + strand, within Atu3816at 911.518 kb on - strand, within Atu3816at 911.520 kb on - strand, within Atu3816at 911.531 kb on - strand, within Atu3816at 911.534 kb on + strand, within Atu3816at 911.542 kb on - strand, within Atu3816at 911.542 kb on - strand, within Atu3816at 911.612 kb on + strand, within Atu3816at 911.671 kb on - strand, within Atu3816at 911.780 kb on + strand, within Atu3816at 911.786 kb on + strand, within Atu3816at 911.846 kb on + strand, within Atu3816at 911.854 kb on - strand, within Atu3816at 911.905 kb on - strand, within Atu3816at 911.934 kb on + strand, within Atu3816at 911.978 kb on - strand, within Atu3816at 911.990 kb on - strand, within Atu3816at 912.143 kb on - strand, within Atu3816at 912.230 kb on + strand, within Atu3816at 912.235 kb on + strand, within Atu3816at 912.235 kb on + strand, within Atu3816at 912.235 kb on + strand, within Atu3816at 912.235 kb on + strand, within Atu3816at 912.238 kb on - strand, within Atu3816at 912.243 kb on - strand, within Atu3816at 912.243 kb on - strand, within Atu3816at 912.344 kb on - strandat 912.443 kb on - strandat 912.457 kb on + strandat 912.578 kb on + strandat 912.580 kb on + strandat 912.580 kb on + strandat 912.656 kb on + strandat 912.664 kb on - strandat 912.684 kb on + strandat 912.684 kb on + strandat 912.692 kb on - strandat 912.720 kb on + strandat 912.739 kb on + strandat 912.739 kb on + strandat 912.739 kb on + strandat 912.745 kb on + strandat 912.747 kb on - strandat 912.750 kb on + strandat 912.756 kb on + strandat 912.764 kb on - strandat 912.771 kb on + strandat 912.771 kb on + strandat 912.800 kb on - strandat 912.853 kb on - strand, within Atu3817at 913.004 kb on - strand, within Atu3817at 913.051 kb on - strand, within Atu3817at 913.054 kb on + strand, within Atu3817at 913.251 kb on - strand, within Atu3817at 913.307 kb on - strand, within Atu3817at 913.322 kb on - strand, within Atu3817

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Per-strain Table

Position Strand Gene LocusTag Fraction anthranilamide (C)
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910,360 - -0.3
910,451 + -0.3
910,492 - Atu3815 0.16 -0.7
910,493 - Atu3815 0.16 -1.3
910,493 - Atu3815 0.16 +0.0
910,500 + Atu3815 0.17 -1.8
910,528 - Atu3815 0.21 +0.1
910,564 - Atu3815 0.27 +0.9
910,606 + Atu3815 0.33 -0.3
910,607 - Atu3815 0.33 -0.6
910,634 + Atu3815 0.37 -0.3
910,749 - Atu3815 0.55 -0.3
910,832 + Atu3815 0.67 -1.5
910,849 + Atu3815 0.70 -0.8
910,867 - Atu3815 0.73 -0.3
911,001 + -0.0
911,026 - -0.5
911,046 - -0.3
911,105 + -0.4
911,144 - -0.2
911,146 - +0.7
911,254 + +0.1
911,283 + -0.7
911,324 - +0.1
911,510 + Atu3816 0.17 +0.0
911,518 - Atu3816 0.18 +0.6
911,520 - Atu3816 0.18 -0.5
911,531 - Atu3816 0.19 +0.8
911,534 + Atu3816 0.20 +0.1
911,542 - Atu3816 0.20 +0.3
911,542 - Atu3816 0.20 +0.5
911,612 + Atu3816 0.27 +0.8
911,671 - Atu3816 0.33 +0.1
911,780 + Atu3816 0.43 +0.3
911,786 + Atu3816 0.44 +0.4
911,846 + Atu3816 0.49 +0.0
911,854 - Atu3816 0.50 +0.2
911,905 - Atu3816 0.55 +0.0
911,934 + Atu3816 0.58 +0.3
911,978 - Atu3816 0.62 +0.7
911,990 - Atu3816 0.63 +0.1
912,143 - Atu3816 0.78 +0.5
912,230 + Atu3816 0.86 +0.4
912,235 + Atu3816 0.87 +0.1
912,235 + Atu3816 0.87 -0.2
912,235 + Atu3816 0.87 +0.6
912,235 + Atu3816 0.87 +0.5
912,238 - Atu3816 0.87 +0.1
912,243 - Atu3816 0.87 +2.4
912,243 - Atu3816 0.87 +0.0
912,344 - +0.1
912,443 - +0.5
912,457 + -0.4
912,578 + +0.5
912,580 + -1.3
912,580 + +0.0
912,656 + -0.0
912,664 - -0.4
912,684 + -0.3
912,684 + +0.6
912,692 - +0.3
912,720 + -0.1
912,739 + +0.2
912,739 + -0.2
912,739 + -0.5
912,745 + +0.4
912,747 - +1.2
912,750 + -0.8
912,756 + +0.1
912,764 - +0.2
912,771 + +0.1
912,771 + +0.1
912,800 - -0.3
912,853 - Atu3817 0.12 -0.4
913,004 - Atu3817 0.22 -0.1
913,051 - Atu3817 0.25 -0.5
913,054 + Atu3817 0.25 +0.6
913,251 - Atu3817 0.38 -0.1
913,307 - Atu3817 0.42 -0.6
913,322 - Atu3817 0.43 -0.0

Or see this region's nucleotide sequence