Experiment: anthranilamide (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3561 and Atu3562 overlap by 25 nucleotides Atu3562 and Atu3563 are separated by 54 nucleotides Atu3563 and Atu3564 are separated by 271 nucleotides
Atu3561: Atu3561 - hypothetical protein, at 615,376 to 615,840
Atu3561
Atu3562: Atu3562 - hypothetical protein, at 615,816 to 616,241
Atu3562
Atu3563: Atu3563 - transcription elongation factor regulatory protein, at 616,296 to 616,778
Atu3563
Atu3564: Atu3564 - endo-1,3-1,4-beta-glycanase, at 617,050 to 618,447
Atu3564
Position (kb) 616
617 Strain fitness (log2 ratio) -1
0
1 at 615.319 kb on + strand at 615.327 kb on - strand at 615.339 kb on - strand at 615.396 kb on + strand at 615.419 kb on + strand at 615.427 kb on - strand, within Atu3561 at 615.504 kb on - strand, within Atu3561 at 615.600 kb on - strand, within Atu3561 at 615.677 kb on + strand, within Atu3561 at 615.756 kb on + strand, within Atu3561 at 615.889 kb on + strand, within Atu3562 at 616.159 kb on - strand, within Atu3562 at 616.159 kb on - strand, within Atu3562 at 616.260 kb on - strand at 616.267 kb on - strand at 616.387 kb on + strand, within Atu3563 at 616.387 kb on + strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.424 kb on - strand, within Atu3563 at 616.425 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.527 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.542 kb on - strand, within Atu3563 at 616.615 kb on + strand, within Atu3563 at 616.736 kb on - strand at 616.758 kb on - strand at 616.769 kb on - strand at 616.787 kb on + strand at 616.850 kb on + strand at 616.850 kb on + strand at 616.948 kb on + strand at 617.004 kb on + strand at 617.012 kb on - strand at 617.079 kb on + strand at 617.086 kb on + strand at 617.086 kb on + strand at 617.094 kb on - strand at 617.257 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.303 kb on + strand, within Atu3564 at 617.309 kb on - strand, within Atu3564 at 617.310 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.311 kb on - strand, within Atu3564 at 617.481 kb on + strand, within Atu3564 at 617.502 kb on - strand, within Atu3564 at 617.517 kb on + strand, within Atu3564 at 617.592 kb on - strand, within Atu3564 at 617.638 kb on + strand, within Atu3564 at 617.712 kb on - strand, within Atu3564
Per-strain Table
Position Strand Gene LocusTag Fraction anthranilamide (C) remove 615,319 + +1.2 615,327 - -1.6 615,339 - +0.8 615,396 + -0.5 615,419 + +0.0 615,427 - Atu3561 0.11 +0.0 615,504 - Atu3561 0.28 -0.1 615,600 - Atu3561 0.48 -0.5 615,677 + Atu3561 0.65 -0.8 615,756 + Atu3561 0.82 -0.1 615,889 + Atu3562 0.17 -0.1 616,159 - Atu3562 0.81 +0.8 616,159 - Atu3562 0.81 -0.1 616,260 - +0.0 616,267 - +0.2 616,387 + Atu3563 0.19 +1.4 616,387 + Atu3563 0.19 +0.5 616,424 - Atu3563 0.27 +1.4 616,424 - Atu3563 0.27 +0.0 616,425 - Atu3563 0.27 -0.1 616,527 - Atu3563 0.48 +0.7 616,527 - Atu3563 0.48 +0.4 616,542 - Atu3563 0.51 +0.4 616,542 - Atu3563 0.51 -0.1 616,615 + Atu3563 0.66 -0.5 616,736 - -0.0 616,758 - -0.1 616,769 - +0.6 616,787 + -1.5 616,850 + -0.2 616,850 + -0.2 616,948 + -0.7 617,004 + -0.7 617,012 - -0.5 617,079 + -0.1 617,086 + -0.0 617,086 + +0.3 617,094 - +1.4 617,257 + Atu3564 0.15 +0.1 617,303 + Atu3564 0.18 -1.2 617,303 + Atu3564 0.18 -0.2 617,303 + Atu3564 0.18 +0.4 617,303 + Atu3564 0.18 +0.0 617,303 + Atu3564 0.18 -0.3 617,303 + Atu3564 0.18 +0.3 617,303 + Atu3564 0.18 -0.7 617,303 + Atu3564 0.18 -0.3 617,303 + Atu3564 0.18 +0.1 617,309 - Atu3564 0.19 -0.6 617,310 - Atu3564 0.19 -1.4 617,311 - Atu3564 0.19 -0.0 617,311 - Atu3564 0.19 -0.1 617,311 - Atu3564 0.19 +0.1 617,311 - Atu3564 0.19 +0.0 617,311 - Atu3564 0.19 +0.2 617,311 - Atu3564 0.19 -0.1 617,311 - Atu3564 0.19 +0.6 617,311 - Atu3564 0.19 +0.0 617,311 - Atu3564 0.19 +0.6 617,311 - Atu3564 0.19 +0.0 617,481 + Atu3564 0.31 -0.3 617,502 - Atu3564 0.32 -1.0 617,517 + Atu3564 0.33 +0.1 617,592 - Atu3564 0.39 +0.9 617,638 + Atu3564 0.42 -0.4 617,712 - Atu3564 0.47 +0.5
Or see this region's nucleotide sequence